Gene JJD26997_1083 details

Gene Information

• Locus tag: JJD26997_1083
• Symbol: ligA
• ID: 5390553
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Campylobacter jejuni subsp. doylei 269.97
• Kingdom: Bacteria
• Replicon accession: NC_009707
• Strand: -
• Start bp: 955298
• End bp: 957241
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 640862084
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_001398174
• Protein GI: 153952455
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 0.88186
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAG AAGAGTATTT AGAAAAAGTT GCTTTAGCAA ATTTGTGGAT GAGAGCATAT 
TATGAAAAAG ATGAACCCTT GGCTAGTGAT GAAGAATACG ATGCTTTAAT CAGAGAATTA 
AGAGTTTTTG AAGAACAAAA TAAAGATGAA GTTTCAAAAG ACTCTCCAAC GCAAAAAATA 
GCTCCTACCA TACAAAGCGA GTTTAAAAAA ATAGCTCATT TAAAGCGTAT GTGGTCGATG 
GAAGATGTAT TTGATGAGAG TGAGCTTAGG GCTTGGGCAA AACGCGCAAA ATGTGAAAAA 
AACTTTTTTA TAGAGCCTAA ATTTGATGGA GCGAGTTTAA ATTTGCTTTA TGAAAATGGT 
AAATTAGTAA GCGGTGCCAC TAGGGGCGAT GGCGAAGTGG GTGAGGATAT AACGCTTAAT 
GTTTTTGAGA TAGAAAATAT ACCTAAAAAT ATAGCCTATA AAAAAAGGAT AGAAATTCGT 
GGAGAGGTAG TGATTTTAAA AGATGATTTT GAAAAAATTA ACGAAAAAAG AGCCCTTTTA 
AATCAAAGTT TATTTGCTAA TCCACGCAAT GCTGCAAGTG GGAGTTTAAG GCAGCTTGAT 
ACAAGTATCA CCAAAGAAAG AAATTTGAAA TTTTATCCTT GGGGAGTAGG GGAAAATACC 
TTAAATTTCA CCAAACACAG TGAGGTGATG CAATTTGTTA GAGATCTTGG TTTTTTAAAA 
GATGATTTTA TTAAACTTTG TGCTAATTTA GACGAGGTTT TAAAAGCTTA TGATGAGCTT 
TTAACTTTAA GAGAAAAAAA GCCTATGATG ATGGATGGTA TGGTTGTAAG AGTTGATGAT 
CTTGCACTTT GTGAAGAACT AGGCTATACG GTAAAATTTC CAAAATTTAT GGCAGCTTTT 
AAATTTCCTG CACTTGAAAA AACCACGCGT TTAATAGGGA TAAATTTACA AGTTGGAAGA 
AGTGGGGTGA TCACTCCTGT GGCGGTTTTA GAGCCTGTAA ATTTAGATGG GGTTGTAGTA 
AAATCAGCCA CACTTCATAA TTTTGATGAG ATTGCAAGAC TTGATGTTAA AATCAATGAT 
TTTGTAAGCG TGATAAGAAG TGGTGATGTT ATCCCTAAAA TCACTAAGGT TTTTAAAGAG 
CGTAGAGAAG GTTTAGAGAT GGAAATTTCA CATCCTAAGC TTTGTCCTAC TTGCCAAAGT 
GAGCTTTTGG ATGAAGGAAC TTTAATAAAA TGTCAAAATA TAGACTGTGA AGATAGACTT 
GTAAATTCTA TCATTCATTT TGTTTCTAAA AAATGTCTTA ATATCGACGG ACTTGGAGAA 
AATATAGTAG AGCTTTTATA CAAGCACAAA AAAATCACTA CGCTTGAGAG TATTTTTCAT 
TTAAAATTTA GTGATTTTGA AGGTTTGGAA GGCTTTAAAG AAAAGAAAAT CAACAATCTT 
TTAAATGCCA TAGAACAAGC CAGAGAATGC GAACTTTTTC GTTTTATCAC GGCTTTAGGG 
ATAGAGCATA TTGGCGAGGT TGCGGCTAAA AAATTAAGCT TAAGTTTTGG TAAAGAATGG 
CACAAGCAAA GCTTTGAAGC TTATGTTAAT TTAGAAGGTT TTGGTGAGCA AATGGCTTTA 
AGTCTTTGTG AATTTACGCG TGTTAATCAT ACAAGAATTG ATGAGTTTTA CAAGCTTTTA 
AATTTAAAAA TAGAAAAACT TGAAGTTAAA AGCGATAGTG TGATTTTTGG TAAAACTTTT 
GTGATTACAG GTACTCTTTC ACGCCCAAGA GATGAGTTTA AGGCTTTGAT AGAAAATCTT 
GGGGGTAAAG TAAGTGGCTC AGTTTCTAAA AAGACTGACT ATGTGCTTTT TGGAGAAGAG 
GCAGGTTCTA AGCTTAGCAA GGCTAAAGAG CTTGAAGTAA AATGTATAGA TGAAAGTGCT 
TTTAATGAGC TTGTTAAAGA ATAG 

 

Protein sequence

MKKEEYLEKV ALANLWMRAY YEKDEPLASD EEYDALIREL RVFEEQNKDE VSKDSPTQKI 
APTIQSEFKK IAHLKRMWSM EDVFDESELR AWAKRAKCEK NFFIEPKFDG ASLNLLYENG 
KLVSGATRGD GEVGEDITLN VFEIENIPKN IAYKKRIEIR GEVVILKDDF EKINEKRALL 
NQSLFANPRN AASGSLRQLD TSITKERNLK FYPWGVGENT LNFTKHSEVM QFVRDLGFLK 
DDFIKLCANL DEVLKAYDEL LTLREKKPMM MDGMVVRVDD LALCEELGYT VKFPKFMAAF 
KFPALEKTTR LIGINLQVGR SGVITPVAVL EPVNLDGVVV KSATLHNFDE IARLDVKIND 
FVSVIRSGDV IPKITKVFKE RREGLEMEIS HPKLCPTCQS ELLDEGTLIK CQNIDCEDRL 
VNSIIHFVSK KCLNIDGLGE NIVELLYKHK KITTLESIFH LKFSDFEGLE GFKEKKINNL 
LNAIEQAREC ELFRFITALG IEHIGEVAAK KLSLSFGKEW HKQSFEAYVN LEGFGEQMAL 
SLCEFTRVNH TRIDEFYKLL NLKIEKLEVK SDSVIFGKTF VITGTLSRPR DEFKALIENL 
GGKVSGSVSK KTDYVLFGEE AGSKLSKAKE LEVKCIDESA FNELVKE