| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Anae109_3725 |
|---|
| Symbol | |
|---|
| ID | 5375329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anaeromyxobacter sp. Fw109-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009675 |
|---|
| Strand | + |
|---|
| Start bp | 4340425 |
|---|
| End bp | 4342380 |
|---|
| Gene Length | 1956 bp |
|---|
| Protein Length | 651 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 640845246 |
|---|
| Product | sigma-54 dependent trancsriptional regulator |
|---|
| Protein accession | YP_001380888 |
|---|
| Protein GI | 153006563 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR02329] propionate catabolism operon regulatory protein PrpR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.191772 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCCCG CGGACGCTGC CGAGGCGCCC GTGCCCTTTC GCAGCGACGA GAAGCCGGTC
ATCTGGGCGT TCAGCTCGAG CCGGCTGCGC CAGGTGCTCG AGAGCGCCGC CCCCATCTAC
GCGGACCGCG CCGAGGTGCG CGTCTTCGAC CTGAGCTTCG AGGGCGCGCT CGAGACGGCG
CAGAGCCTCA CCGAGGCGGA CGAGCGGGTG GACGCGTTCG TCGCCGCCGG CTCCAACGGC
GCGTACCTGC GCGACCACGG GCCCGTCCCC GTGGCGCTGG TGGACGTCTC GACCACCGAC
GCGCTCCAGG CGCTCGCGCA CGCGCGCACC CTCGGGCGCC GCGTCGGCGT GGTGAACTTC
CGCCGCGTGC TGCCCGGCCT CGAGCGCTGG AAGGACCTCC TGCGCGGCGT CCAGATCGAG
CAGCGCGCCT ACGTCACCCC CGAGGAGGCC CGGGCCGCCG TGGCGGAGCT CGCGGCCCAC
GGCTTCGAGG TGGTGGTGGG CCCCGGCCCC GCCTGCGACG AGGCCGAGCG CGCCGGCCTG
AAGTCGGTGC TCCTCTACTC GCTGGAGTGC GTCTGCGCGA CCATCGAGCG GGCCATCGAG
ATGGCGCAGG TCGCGCGGGC GGAGCGGGGG CGGCGCGAGC AGCTCGCGGG CGTCATCGCC
CACATCGACG AGGCCGTCGT CGCGGTGGAC GCGGCCGAGC GGATCGCGGT GGTGAACCCC
GGCTTCGAGC GGCTGCTCGG CGCGCGCGGG GTGGAGCTCG TGGGCAAGCG CCTCTCGAGC
GTCGCACCCG AGCTGTCCCT GGCCCGGGTC CTCGAGACGG GCGCGCCCGA GCTGCGGTCG
TTCCAGAAGC TCGGCGGGCG CAGCCTCGTC GTGAGCCGCA TCCCCGTGCG CCAGCGCGGT
GTCCTCTCCG GCGCGGTGCT CACCTGCCAG GACTCGAGGA CGCTCCTGCG CGTGGACCGT
GACCTCCGCT CCGAGCTCCG GCCGCGCCGC TTCATCGCCC GCTACGAGCT CGCGGGGATC
GTGGGCACGT CGGAGGCCAT CCGGACGGTG CGGACCCTCG CCGAGCAGTA CGCCGGGACC
GAGGGGACCG TCCTCATCAC GGGCGAGAGC GGCACCGGCA AGGAGATGAT CGCGCAGGGC
GTCCACAACG CCGGGCGGCG CCGCGACCGG CCCTTCGTCG CCATCAACTG CGCCGCCTTC
CCCGAGGCGC TGCTCGAGTC GGAGCTGTTC GGCTACGAGG AGGGCGCCTT CACCGGCTCG
CGCCGCGGCG GGCGGGCCGG GCTCTTCGAG GCCGCCCACA CCGGCACGAT CTTCCTCGAC
GAGGTCGGAG ACGTCCCCAT CACGCTTCAG ACCCGCCTCC TGCGCGTGCT GCAGGAGCGC
CAGGTGCTGC GGCTCGGCAG CAACGACCCG ACCCCGATCG ACGTCCGGGT GGTCGCCGCG
ACGAACCGCG ATCTCAAGCG CGAGATCGCG CGCGGCGCCT TCCGCGAGGA TCTCTACTAC
CGGCTCAACA TCCTCCCCAT CCACCTGCCG CCGCTGCGGG CGCGGCGAGA CGACGTGGCG
CCCATCGCCG AGGCGCTCCT GCGCGACGCG CTCGCGCGCC ACGGCGTGCC GGACGCGCTC
CCGCGGGCGC TCGCCCTGCT CCTCCCCTGG CTCCAGGGCT ACGCCTGGCC GGGGAACGTC
CGCGAGCTCG AGAACGTGCT GGAGCGCATC GCGGTCCTCT ACTCGCACCG GGCCCCGGAC
CAGGTCGGAT CGGAGGCCTT GCGCGCCGTG CTCCCGGAGC TGTTCCAGGT CGCGGACGAG
CCGCGAGACG GCGATCTCCG CAGCGCCCGC GAGGCCCAGG AGGCGGCGGT GATCCGGCGC
GTGGTCGAGG AGTGCGGCGG CAACATGAAG GCGGCCGCCA AGCGGCTGGG CGTGGGACGC
TCCACGCTTT ACCGCAAGCT GAGAACGGCG GGGTGA
|
|---|
| Protein sequence | MSPADAAEAP VPFRSDEKPV IWAFSSSRLR QVLESAAPIY ADRAEVRVFD LSFEGALETA
QSLTEADERV DAFVAAGSNG AYLRDHGPVP VALVDVSTTD ALQALAHART LGRRVGVVNF
RRVLPGLERW KDLLRGVQIE QRAYVTPEEA RAAVAELAAH GFEVVVGPGP ACDEAERAGL
KSVLLYSLEC VCATIERAIE MAQVARAERG RREQLAGVIA HIDEAVVAVD AAERIAVVNP
GFERLLGARG VELVGKRLSS VAPELSLARV LETGAPELRS FQKLGGRSLV VSRIPVRQRG
VLSGAVLTCQ DSRTLLRVDR DLRSELRPRR FIARYELAGI VGTSEAIRTV RTLAEQYAGT
EGTVLITGES GTGKEMIAQG VHNAGRRRDR PFVAINCAAF PEALLESELF GYEEGAFTGS
RRGGRAGLFE AAHTGTIFLD EVGDVPITLQ TRLLRVLQER QVLRLGSNDP TPIDVRVVAA
TNRDLKREIA RGAFREDLYY RLNILPIHLP PLRARRDDVA PIAEALLRDA LARHGVPDAL
PRALALLLPW LQGYAWPGNV RELENVLERI AVLYSHRAPD QVGSEALRAV LPELFQVADE
PRDGDLRSAR EAQEAAVIRR VVEECGGNMK AAAKRLGVGR STLYRKLRTA G
|
|---|
| |