| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcer98_3772 |
|---|
| Symbol | |
|---|
| ID | 5343484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus cytotoxicus NVH 391-98 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009674 |
|---|
| Strand | - |
|---|
| Start bp | 3833804 |
|---|
| End bp | 3835321 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640841262 |
|---|
| Product | choline/carnitine/betaine transporter |
|---|
| Protein accession | YP_001376958 |
|---|
| Protein GI | 152977441 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAAAC TGACGAAAAC ATTTATTGTT TCATTGGTAT TATGTCTTGC ATTTACGATT
TGGGGGATTA TTCCTGAATC AGTGATTGGA AAAGGAAGTT TAGGAAATGT CACAACTGCT
ATTCAGCATG TGTTAGTTAG TAAGTTTGGT TGGTTTTATA TTATTTCTGT TTCTATTTTC
CTAGGGATTT CTATCTTTTT AATCGTTTCA AAATACGGTT CAATTCGTTT AGGGAAAGAT
GATGATGAAC CTGATTATAG TTATTTAACA TGGTTTGCCA TGTTATTTAG TGCTGGTATG
GGGATTGGAC TGATTTTCTG GGGCGTTGCG GAACCATTAA ATCATTTATA TGCACCACCA
TATGGAGAAA GTGCTACAGA ACAAAGTGCC CGTCTGGCAC TGCGCTTCTC ATTTTTCCAT
TGGGGATTAC ATCCTTGGGG ACTATATGCA CTTGTAGCGC TTTGTATTGC GTATTTTACA
TTCCGAAAAG GAAAGCCAAG TACAATTAGT GCGACCGTAG GCTCTTTATT TAAGAGTGGA
GAACATGGGC GCGTTGCACA TATATTTGAT GTATTAGCTG TTTTTGCAAC AGTGTTTGGT
GTTGCAACTT CGTTAGGACT TGGTGCACAA CAAATCGCGG GCGGTATTGG GTATTTAACG
CCGATACCGA ATTCATTAAC AACACAACTC GTGATTATTG GTGCTGTAAC AATTCTGTTT
ATGTTATCTG CTCAAACAGG ATTGGATAAA GGGATTAAAT ATTTAAGTAA TACGAATATT
ATTTTAGCCT TTGCACTAAT GGTAATTCTA TTATTTGCAG GTCCAACGAA TTTTATTATG
AACTATTTCA CTTCGACAAT TGGGGCTTAC ATTCAGGAGT TACCAAGCAT GAGTTTTCGA
TTAAGTCCAT TAGATAAAAG CGGAAATCAA TGGATTCAAT CATGGACAAT TTTCTATTGG
GCATGGTGGA TTGCATGGTC ACCATTCGTT GGGACGTTTA TTGCTCGTGT ATCGCGCGGA
CGTACAATTC GAGAGTTTGT AATTGGTGTA CTGCTCGTTC CAACATTAAT TGGGGCACTT
TGGTTCTCTG TTTTTGGTGG TACTGGTATT CATATGGAAT TATTTGACCA TGCAAATATT
TATGAACAAA TTAAAGAGAT GGGAACAGAA ATTGGATTAT TCGCTGTGTT CGATCATATG
GGAAGTATCG GTCCTCTGTT ATCAGTACTT GCAATTCTCT TGATTTCAAC GTTCTTTATT
ACATCGGCGG ATTCTGCGAC ATTTGTTCTT GGTATGCTAA CGACACACGG TAGTTTGAAT
CCACCAAATC GCATTAAGTT GATTTGGGGT ATTGTTCAAG CGGCGTTAGC AGCAATTTTA
CTTTATGTCG GTGGTTTAGC TGCATTACAG ACAGCTTCTA TTATCGCAGC ATTTCCATTT
GCATTTGTTA TCTTCTTTAT GGTAGCTTCG TTATTTAAAG AGCTACAAAA AGAAGGGCGG
CATCGCCAAC GTAAATGA
|
|---|
| Protein sequence | MRKLTKTFIV SLVLCLAFTI WGIIPESVIG KGSLGNVTTA IQHVLVSKFG WFYIISVSIF
LGISIFLIVS KYGSIRLGKD DDEPDYSYLT WFAMLFSAGM GIGLIFWGVA EPLNHLYAPP
YGESATEQSA RLALRFSFFH WGLHPWGLYA LVALCIAYFT FRKGKPSTIS ATVGSLFKSG
EHGRVAHIFD VLAVFATVFG VATSLGLGAQ QIAGGIGYLT PIPNSLTTQL VIIGAVTILF
MLSAQTGLDK GIKYLSNTNI ILAFALMVIL LFAGPTNFIM NYFTSTIGAY IQELPSMSFR
LSPLDKSGNQ WIQSWTIFYW AWWIAWSPFV GTFIARVSRG RTIREFVIGV LLVPTLIGAL
WFSVFGGTGI HMELFDHANI YEQIKEMGTE IGLFAVFDHM GSIGPLLSVL AILLISTFFI
TSADSATFVL GMLTTHGSLN PPNRIKLIWG IVQAALAAIL LYVGGLAALQ TASIIAAFPF
AFVIFFMVAS LFKELQKEGR HRQRK
|
|---|
| |