Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcer98_3545 |
Symbol | dapF |
ID | 5343491 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bacillus cytotoxicus NVH 391-98 |
Kingdom | Bacteria |
Replicon accession | NC_009674 |
Strand | - |
Start bp | 3611138 |
End bp | 3612004 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 640841046 |
Product | diaminopimelate epimerase |
Protein accession | YP_001376744 |
Protein GI | 152977227 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCAAT TTTCTTTTAC AAAAATGCAT GGTCTTGGAA ATAGCTATAT ATATGTAAAT ATGTTTGAAG AACATATTCC AGAGGAAGAA CTAGCTCTTG TAGCAGAGAA AGTTTCGAAC AGAAATACCG GCATTGGGGC TGATGGAATG ATTTTAATTT GTCCATCTGA AGTAGCACCA GTAAAAATGC GTATGTTTAA TAATGATGGC TCAGAGGGAA AGAGTTGTGG AAATGGGCTT CGCTGTGTAG CGAAATATGC ATATGAGCAT AAATTAGTAG AAGAAACGAT TTTTACGATT GAAACATTAG CTGGTATTGT AACAGCTGAG GTAACAGTCG AGAATGATAT TGTTACACTC GTTAAAATTG ATATGGGGGC ACCTCGTTTA ACACGTGCGG AGTTACCGAT GCTTGGAGAA GGAGAAACGC CGTTTATTCG TGAGGACTTT CTATTTCATA ATCAACGTTA TGCATTTACA GCAGTTTCTA TGGGAAATCC ACATGCTGTA ATTTTTGTTG ATGATGTAGA AAAGGCACCT CTTACAACAC TGGGACCTGT ACTTGAGAAT CATGAAATGT TTCCAGAACG GGTAAATGTT GAGTTCATTG AAATTTTGAA TGAAACAGAG ATGAATTTCC GCGTATGGGA ACGTGGATCA GGTGTAACGC AAGCATGTGG AACGGGAGCG TGTGCATCTG TTGTAGCAGC AATCTTAAAT GGAAAAATGG AGCGCGGTAA AGAAATTACG GTTCATTTAG CTGGCGGTGA CTTAATGATT ACGTGGACAG AAGAAGGAAC TGTAATGATG AAAGGACCAG CAGAAGTGAT TTGTCACGGA GTGTATGAGT ACAAGATAGA AGCATAA
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Protein sequence | MSQFSFTKMH GLGNSYIYVN MFEEHIPEEE LALVAEKVSN RNTGIGADGM ILICPSEVAP VKMRMFNNDG SEGKSCGNGL RCVAKYAYEH KLVEETIFTI ETLAGIVTAE VTVENDIVTL VKIDMGAPRL TRAELPMLGE GETPFIREDF LFHNQRYAFT AVSMGNPHAV IFVDDVEKAP LTTLGPVLEN HEMFPERVNV EFIEILNETE MNFRVWERGS GVTQACGTGA CASVVAAILN GKMERGKEIT VHLAGGDLMI TWTEEGTVMM KGPAEVICHG VYEYKIEA
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