| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcer98_2870 |
|---|
| Symbol | |
|---|
| ID | 5343748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus cytotoxicus NVH 391-98 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009674 |
|---|
| Strand | - |
|---|
| Start bp | 2944063 |
|---|
| End bp | 2945955 |
|---|
| Gene Length | 1893 bp |
|---|
| Protein Length | 630 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640840372 |
|---|
| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| Protein accession | YP_001376098 |
|---|
| Protein GI | 152976581 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
|---|
| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.016121 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATCTAA CGCAAATTCA AAACCCTAGT TTTTTGAAAG ATATGTCTAT CAGCGAACTA
GAGGAATTGA GTGAGGATAT TCGTAAGTTT TTAATTGAAG AGCTCTCTCA AACAGGTGGA
CATATTGCTC CTAACTTAGG TGTAGTAGAA CTCACAATTG CGCTGCATAC ATTATTTGAT
AGTCCGAAAG ATAAATTTTT ATGGGATGTC GGACATCAAT CTTATGTTCA TAAAATTTTA
ACAGGGCGTG CAAAAGAGTT TCGTACATTA AGGCAGTATA AAGGATTGTG TGGTTTTCCA
AAACGATGTG AAAGTGAACA TGATGTGTGG GAAACTGGTC ATAGTTCAAC ATCATTATCT
GCTGCGATGG GAATGGCTTT AGCGCGTGAT TTAAAGAAAA CAGATGAATA TGTTATACCG
ATTATCGGAG ATGGTGCTTT AACTGGAGGA ATGGCTCTAG AAGCGCTGAA TCATATCGGA
CATGAAAAGA CAGATATGAT TGTGATACTT AACGATAATG AAATGTCAAT CGCACCGAAT
GTTGGAGCAC TTCATAATGT ACTTGGTCGT TTGCGTACAG CTGGTAAATA TCAATGGGTA
AAAGATGAAC TGGAGTATAT TCTTAAAAAG ATTCCAGCAG TTGGTGGGAA AGTTGCAGCG
ACGGCTGAAA AGATTAAAGA TAGCTTGAAA TATTTATTAG TATCTGGTGT TTTTTTTGAG
GAATTAGGTT TTACATATTT AGGTCCAGTT GATGGACATG ATTATGAAAA ACTATTTGAA
ACACTGCAAT ATGCGAAGAA AACAAAAGGT CCAGTACTTG TTCATGTGAT TACAAAGAAA
GGGAAAGGAT ATAAACCTGC TGAAAGCGAT GTAATCGGTA CTTGGCATGG CACTGGCCCA
TATAAGATTG AATCGGGAGA CTTTGTGAAA CCGAAGGAAG TTGCTCCAGC ATGGAGCGCT
GTTGTTAGTG AAACGGTTCG TAAACTGGCA AGAGTGGATG AGCGTATCGT AGCGATTACG
CCGGCGATGC CTGTTGGATC TAAACTTGAG AAGTTTCATC AAGAATTTCC AAATCGTATG
ATTGATGTAG GAATTGCCGA GCAACATGCA ACAACGATGG CAGCTGGAAT GGCAACACAA
GGAATGAAAC CATTCTTAGC AATCTATTCG ACGTTTTTAC AAAGAGCATA TGATCAAGTT
GTTCATGATA TATGTCGTCA AAACTTAAAT GTTTTCATCG GTATTGATCG TTCTGGATTA
GTTGGTGCAG ATGGAGAAAC GCATCAAGGA GTATTTGATA TTGCGTTTTT ACGCCACTTA
CCCAATATCG TCCTTATGAT GCCGAAAGAT GAGAATGAAG GACAACATTT AGTATATACA
GCAATGCAAT ATGAAGATGG ACCGATTGCA CTTCGATATC CGCGTGGAAA TGGACTTGGT
GTTCCAATGG ATGATGAATT CAAGGTAATT CCAATTGGCA CATGGGAAAC ATTAAGAGAA
GGTACGCAAG CAGCTATTGT AACATTTGGG ACAACAATTC CAATGGCTAT GGAAGCAGCC
GAGCGTCTTG GAAAAGCTGG TGTTTCTGTA AAGGTGGTAA ATGCTCGTTT TATTAAGCCA
ATGGATGAAG CATACTTACA TGATCTTTTA GGAAAGAATA TACCGATTTT AACAATTGAA
GAAGCTTGTT TAATCGGCGG GTTTGGTTCA GGAGTTATGG AGTTTGCTGC TGAACATGGA
TATCATAGTG CATTGATTGA ACGAATGGGA ATTCCAGATT ATTTTATCGA GCACGGTAGT
GTGACGAAAT TATTAGAAGA AATTGGGTTA ACAACAGATG CGGTTGTAGA TCGCATCCAT
ACAATGATTC CATCAAAACA AAAAAGGGCG TAA
|
|---|
| Protein sequence | MDLTQIQNPS FLKDMSISEL EELSEDIRKF LIEELSQTGG HIAPNLGVVE LTIALHTLFD
SPKDKFLWDV GHQSYVHKIL TGRAKEFRTL RQYKGLCGFP KRCESEHDVW ETGHSSTSLS
AAMGMALARD LKKTDEYVIP IIGDGALTGG MALEALNHIG HEKTDMIVIL NDNEMSIAPN
VGALHNVLGR LRTAGKYQWV KDELEYILKK IPAVGGKVAA TAEKIKDSLK YLLVSGVFFE
ELGFTYLGPV DGHDYEKLFE TLQYAKKTKG PVLVHVITKK GKGYKPAESD VIGTWHGTGP
YKIESGDFVK PKEVAPAWSA VVSETVRKLA RVDERIVAIT PAMPVGSKLE KFHQEFPNRM
IDVGIAEQHA TTMAAGMATQ GMKPFLAIYS TFLQRAYDQV VHDICRQNLN VFIGIDRSGL
VGADGETHQG VFDIAFLRHL PNIVLMMPKD ENEGQHLVYT AMQYEDGPIA LRYPRGNGLG
VPMDDEFKVI PIGTWETLRE GTQAAIVTFG TTIPMAMEAA ERLGKAGVSV KVVNARFIKP
MDEAYLHDLL GKNIPILTIE EACLIGGFGS GVMEFAAEHG YHSALIERMG IPDYFIEHGS
VTKLLEEIGL TTDAVVDRIH TMIPSKQKRA
|
|---|
| |