Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcer98_0048 |
Symbol | |
ID | 5344241 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bacillus cytotoxicus NVH 391-98 |
Kingdom | Bacteria |
Replicon accession | NC_009674 |
Strand | + |
Start bp | 54903 |
End bp | 58433 |
Gene Length | 3531 bp |
Protein Length | 1176 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 640837590 |
Product | transcription-repair coupling factor |
Protein accession | YP_001373418 |
Protein GI | 152973901 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAGGAT TATTAGAGCA ATTTTATAAA AATAAAGAGG TTCAATCCAT TATAAATGGT TTAGAAGAAG GATTAAAAGA GCAACTGGTA TCAGGGATGG CAACTTCCTC CCGTTCTTTA TTAATGGCTG CTTTATATAA AAAGACAAAG CAGTCTCAAC TTGTTGTGAC ACACAATTTA TATCAAGCAC AAAAAATCTA TGAAGACTTA GTATCATTAC TTGGTGAAAA GGACGTCTGG CTGTATCCTG TGAATGAATT AATTGCATCA GAAGTTGGTG TTGCCAGCCC TGAACTGAAA GCACAGCGAA TTGAAGTGTT AAATCGTTTA GCGGCGGGAG AGAATGGTAT CATTGTTGCC CCTGTTGCTG GATTACGAAG ATTTTTGCCT ATGAAGGAGT TATGGAAGCA AAAGCAAATT GAAATCAATC TAGGGCAAGA GGTTGATTTA GATGCATTGC TTCATACTTT ACATCATATT GGTTATGAGC GTAAATCAAT GGTAGAGGCT CCAGGAGAGT TTAGCTTGCG CGGGGGAATA TTGGATATTT ATCCTTTAAC AGAGGAATTG CCGTTTCGTA TTGAATTTTT TGATACAGAG GTTGATTCGA TTCGCTTATT CGATGTTGAA GAACAACGAT CTCAAGATAA AAGAGAAAGT GTAAAGTTTG GACCAGCGAC GGAGTTTGTA TTTTCACCAG AAGAGTTGCG TGTAGGTATA GAGCATCTTG AAAAAGGGCT AATGAAGACG ATGCAAAAAT TATCTGATGA CAAGATTAAG ACAGCAGTAT TAGAAACGGT TAGTCATGAG ATAGAGTTAT TAAAGAATGG TCAAAATATA GAGCAAATGT TTAAGTATTT ATCTATTTTC TACAAGGAAC CTGCTAGTCT AATAGATTAT TTACCTGAAA ACGGTGTAGT TATTTTAGAT GAAATTTCAC GCGTTCAAGA GACAGCATCG CATCTTGAGA CAGAAGAGGC AGAGTGGTAT ACATCACTTC TTAGTGAAGG GGCTATTATT CAAGACTTGG TATTCTCTCA TTCCTTTGAA GAATTTTTGC GCCATAAAAA AAGAAGTTTT GTGTATTTAA CATTATTTTT ACGTCACATT GCACATACAC ACCCACAAAA TATTGTCAAT GTGACATGTA AAACAATGCA GGATTTTCAT GGGCAAATGC AACTCTTGAA AACAGAAATT GATAGGTGGA ATGAGGGGCA ATTTACAACA GTTATCTTAG GAACAGATGA AGAGCGTGCC AAGAAATTAC AACATATATT AAGTGATTAT GATATTGAGG CAGATATTAT AGAATCGACA GATATATTAC TTCCTGGACG TTTGCAAATT GCTGTAGGTG ATTTACATGC AGGATTTGAA ATGCCGATGC AAAAGCTTGT TGTCATTACA GAAAAAGAAC TGTTCCATAA AAAGGTGAAA AAGTCGCGAC GCAAGCAAAA GTTATCAAAT GCCGAGCGAA TTAAAAGCTA TTCCGAACTA AAAGTTGGGG ATTATGTTGT TCATGTAAAC CATGGTATTG GTAAATTTTT AGGAATAGAA ACACTAGAGA TTAATGGTGT TCATAAAGAT TACTTAAATA TTAAATATCA AGGAAATGAT AAATTATACG TTCCAATTGA ACAAATTGAT CAAGTTCAAA AATATGTAGG GTCGGAAGGT AAAGACCCGA AAGTTTACAA ACTTGGTGGT AATGATTGGA AAAAGGTGAA AACAAAGGTA GAAAAATCTG TACAAGATAT TGCAGATGAT TTGATTAAAT TATATGCAGA ACGTGAGGCG TCAAAAGGAT ATGCGTTTAC ACCAGATACT GCAGAACAAC GGGAGTTTGA ATCTTCTTTC CCATATCAAG AGACAGAAGA TCAATTGCGC TCCATTGAAG AGATTAAAAA AGATATGGAA CGCAGTCGAC CAATGGATCG TCTTCTTTGT GGTGATGTTG GTTATGGAAA GACAGAAGTA GCGATTAGGG CGGCCTTTAA AGCGATTATG GATGAAAAAC AGGTTGCAAT TTTAGTACCG ACAACCATTC TTGCGCAACA ACACTATGAA ACAATTCGAG AGCGTTTTCA AGACTATCCG ATTAACATCG GGTTATTAAG TCGTTTCCGT ACTCGTAAAG AACAAAATGA AACGATTAAA GGATTGAAAG ATGGGACTGT CGATATTGTT ATTGGGACAC ATCGTATCTT ATCTAAAGAT GTAACATATA AAGACTTAGG CCTTCTTATT ATTGATGAAG AACAACGATT TGGTGTTACG CATAAGGAAA AAATTAAGCA ATTGAAGGCA AATATTGATG TTTTAACGTT AACAGCAACT CCAATTCCAC GTACACTTCA TATGTCTATG CTTGGAGTAC GGGATTTATC GGTTATTGAA ACACCGCCAG AAAATCGTTT CCCAGTACAA ACGTATGTAG TGGAATATAA CCCTGCACTA ATTCGGGAAG CGATAGAAAG AGAACTTGCC CGAGGTGGTC AAATTTACTT CTTATATAAT CGTGTAGAGG ATATTGAAAG AAAAGCAGAT GAAATTTCTA TGTTAGTTCC AGAGGCCCGT GTAACATATG CACATGGGAA AATGAATGAA AGTGAACTTG AATCTGTCAT GTTGTCATTT TTAGAGGGAC AATATGATGT TCTAGTAAGT ACAACAATTA TTGAAACGGG CGTTGATATT CCCAATGTAA ATACATTAAT CGTGTATGAT GCAGATCGTA TGGGATTATC ACAGTTGTAT CAGCTTCGTG GCCGAGTTGG TCGTTCAAAT CGTGTTGCTT ATGCATATTT TGCATACAAG CGCGACAAAG TGTTATCTGA AGTTGCTGAG AAGCGCCTGC AAGCAATTAA GGAATTTACG GAGCTTGGAT CAGGCTTCAA AATTGCAATG CGAGATTTAT CTATTCGTGG TGCAGGGAAT TTATTAGGAG CGGAACAACA TGGATTTATT GATTCGGTTG GATTTGATCT ATATTCCCAA ATGTTAAAAG ATGCCATTGA ACAAAGAAAA GGAAAACAGG GCATTGAAAA TACAATTGAT GTTGAAATTG ATTTAGAAGT AGATGCATAT TTACCGGATA GCTATATATC AGATAGTAAA CAAAAAATTA TGATGTACAA ACAATTTAGA GGTGTTTCTA CACTTGAAGA TATTGAAGAA TTACAAGAAG AAATGATTGA TCGATTTGGT GATTATCCGC AAGAGGTAGG ATATTTATTA CAAATTGCAA ATATTAAAGT GTTGGCAATG AAAGAGCAGA TTGAATTAAT TAAACAAACG AAGTCTGAGG TGACATTCTT ATTCTCGGAA CAAGCAAGTC AAAATATTGA TGGTGGAAAA CTATTTATGC TTGGAAATAA ATTTGGACGT ATGATTGGAC TTGGAATGGA AGGACCACAC TTGAAAGTTA GTATGAAAAT AAATGGATTA GAAACATCAA AATGGTTAAC GATTGCTGAA AATTTATTAA AAGGCTTACC AGACGTGAAG AAAGAGACAA TAAATGCTTA A
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Protein sequence | MIGLLEQFYK NKEVQSIING LEEGLKEQLV SGMATSSRSL LMAALYKKTK QSQLVVTHNL YQAQKIYEDL VSLLGEKDVW LYPVNELIAS EVGVASPELK AQRIEVLNRL AAGENGIIVA PVAGLRRFLP MKELWKQKQI EINLGQEVDL DALLHTLHHI GYERKSMVEA PGEFSLRGGI LDIYPLTEEL PFRIEFFDTE VDSIRLFDVE EQRSQDKRES VKFGPATEFV FSPEELRVGI EHLEKGLMKT MQKLSDDKIK TAVLETVSHE IELLKNGQNI EQMFKYLSIF YKEPASLIDY LPENGVVILD EISRVQETAS HLETEEAEWY TSLLSEGAII QDLVFSHSFE EFLRHKKRSF VYLTLFLRHI AHTHPQNIVN VTCKTMQDFH GQMQLLKTEI DRWNEGQFTT VILGTDEERA KKLQHILSDY DIEADIIEST DILLPGRLQI AVGDLHAGFE MPMQKLVVIT EKELFHKKVK KSRRKQKLSN AERIKSYSEL KVGDYVVHVN HGIGKFLGIE TLEINGVHKD YLNIKYQGND KLYVPIEQID QVQKYVGSEG KDPKVYKLGG NDWKKVKTKV EKSVQDIADD LIKLYAEREA SKGYAFTPDT AEQREFESSF PYQETEDQLR SIEEIKKDME RSRPMDRLLC GDVGYGKTEV AIRAAFKAIM DEKQVAILVP TTILAQQHYE TIRERFQDYP INIGLLSRFR TRKEQNETIK GLKDGTVDIV IGTHRILSKD VTYKDLGLLI IDEEQRFGVT HKEKIKQLKA NIDVLTLTAT PIPRTLHMSM LGVRDLSVIE TPPENRFPVQ TYVVEYNPAL IREAIERELA RGGQIYFLYN RVEDIERKAD EISMLVPEAR VTYAHGKMNE SELESVMLSF LEGQYDVLVS TTIIETGVDI PNVNTLIVYD ADRMGLSQLY QLRGRVGRSN RVAYAYFAYK RDKVLSEVAE KRLQAIKEFT ELGSGFKIAM RDLSIRGAGN LLGAEQHGFI DSVGFDLYSQ MLKDAIEQRK GKQGIENTID VEIDLEVDAY LPDSYISDSK QKIMMYKQFR GVSTLEDIEE LQEEMIDRFG DYPQEVGYLL QIANIKVLAM KEQIELIKQT KSEVTFLFSE QASQNIDGGK LFMLGNKFGR MIGLGMEGPH LKVSMKINGL ETSKWLTIAE NLLKGLPDVK KETINA
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