| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oant_3219 |
|---|
| Symbol | |
|---|
| ID | 5382301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ochrobactrum anthropi ATCC 49188 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009668 |
|---|
| Strand | + |
|---|
| Start bp | 540102 |
|---|
| End bp | 540791 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640835902 |
|---|
| Product | conjugal transfer protein TrbF |
|---|
| Protein accession | YP_001371756 |
|---|
| Protein GI | 153010542 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00389999 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCT TCAAACGACC GACGACCCAT TACGGCAAGG TGCCGGAACC CGAGACTCCC
TATCAAAAAG CCGCACAGGT CTGGGACGAA CGCATCGGCT CGGCCCGCGT GCAGGCGAAG
AACTGGCGCT ATATGGCGTT CGGCTGTCTG ATCCTCTCGG CCGGCTTTGC CGCCGCGCTC
GTCTGGCAAT CGGCGCGTGG AACCGTCGTG CCCTGGGTGG TGCAGGTGGA CAATCTCGGT
CAGGCGCAGG CTGTCGCGCC CGCGAACGCC GATTATCGCC CGACCGATCC GCAGATCGCC
TTCCATCTCG GCCGCTTCAT CGAGCAGGTC CGCGCGATCC CGGCGGACGC GATCATCGTC
CGGCAGAACT GGCTTCGGGC TTACGAGTTC ACCACCGACC GGGGCGCGGC GGCCTTGAAC
GATTATGCGC GGGCCAACGA TCCCTTCACC AAGGTCGGCC GCCAGCAGAT CGCCGTCGAG
GTGTCGAGCG TCATCCGGGC TTCGCCGGAC AGTTTCCGCG TCGCCTGGAC CGAACGCCAT
TTCGAGAACG GCCAGCTTTC CACGACCGAG CGATGGACCG CGATCCTGAC TGTCGTGATC
CAGCCCCCGC GCGATGCCGA ACGATTACGC GCCAATCCGC TGGGAATCTA CATCAACGCA
ATTTCATGGT CGCGGGAGAT GAGCCAATGA
|
|---|
| Protein sequence | MNIFKRPTTH YGKVPEPETP YQKAAQVWDE RIGSARVQAK NWRYMAFGCL ILSAGFAAAL
VWQSARGTVV PWVVQVDNLG QAQAVAPANA DYRPTDPQIA FHLGRFIEQV RAIPADAIIV
RQNWLRAYEF TTDRGAAALN DYARANDPFT KVGRQQIAVE VSSVIRASPD SFRVAWTERH
FENGQLSTTE RWTAILTVVI QPPRDAERLR ANPLGIYINA ISWSREMSQ
|
|---|
| |