| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4378 |
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| Symbol | trmE |
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| ID | 5373423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 5225773 |
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| End bp | 5227134 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640832644 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001368555 |
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| Protein GI | 153002874 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0292979 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGACAACTG ACACTATCGT GGCTCAAGCC ACCGCGCCCG GACGTGGCGG CGTTGGCATC
ATTCGAATTT CAGGCGACAA GGCCAGTGAT GTCGCTATGG CCGTATTAGG TCATCTTCCT
AAAACCCGAT ATGCCGATTA TTGCGATTTT AAAAGTGCAT CGGGCCAAGT AATAGACCAA
GGCATAGCGC TGTTTTTTAA AGGACCGAAT TCCTTTACTG GCGAAGATGT CTTGGAACTT
CAAGGCCACG GCGGCCAAAT TGTCCTCGAC ATGCTGATCA AACGTGTAAT GGAAGTCGGT
GGTATTCGTA TCGCAAAACC AGGTGAGTTC AGCGAACAAG CCTTTATGAA CGATAAGCTC
GACTTAACCC AAGCCGAAGC CATTGCCGAC CTTATCGACG CCACCAGTGA ACAAGCCGCT
AAAAGCGCGC TGCAATCACT ACAAGGTGAA TTTTCTAAGG AAGTCCACGA GCTGGTGGAC
CAAGTCACTA ACCTGCGTTT ATACGTTGAA GCCGCAATTG ATTTCCCCGA TGAAGAAGTC
GACTTTTTAA GTGATGGCAA AATTGCCAAT GCACTCTATA AAATCATCGA CAAACTCGAC
CTAGTGCAAG CCAGTGCCAA GCAAGGTTCT ATTATTCGTG AAGGGATGAA AGTGGTAATT
GCCGGTCGTC CCAATGCCGG AAAATCGAGC TTACTGAATG CGTTAGCGGG TAAAGAGTCG
GCCATTGTGA CTGAGATTGC CGGTACAACA CGTGACGTAT TACGTGAACA TATCCATTTA
GATGGTATGC CGCTGCACAT TATTGATACC GCAGGTCTGC GTGATACCAC TGATACGGTA
GAACAAATTG GTATTGAACG CGCATGGAAT GAAATAAACA GCGCCGATCG CGTGCTATTT
ATGGTGGACG GCACGACAAC CGCCGCCGTC GATCCCCATA CGATTTGGCC TGACTTTGTC
GATCGCCTGC CCTCCAATTT AGGTGTAACA GTGATCCGTA ATAAAGCCGA TCTCACGGGC
GAAGACTTAA TGATGACCGA AGAACAAGGT TATAGCGTCT ACCGGATCTC GGCAAAAACA
GGCTTAGGTG TTGAAGAATT AAAGCAACAC TTGAAGTCAC TTATGGGTTA TCAGAGTAAT
CTCGAAGGTG GCTTTATCGC CCGTCGTCGT CACTTAGAAG CCCTTGAATT AGCCGCAGGA
CACCTGCAAT TGGGTAAAGA GCAGTTAGAG GTTTACCTTG CCGGAGAGCT GCTGGCGGAA
GAGCTACGTA TGTGCCAATT AGCACTATCA GAGATCACTG GCCGCTTCAC TTCTGACGAT
TTACTCGGCA AGATTTTCAG CTCTTTCTGT ATCGGGAAGT AA
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| Protein sequence | MTTDTIVAQA TAPGRGGVGI IRISGDKASD VAMAVLGHLP KTRYADYCDF KSASGQVIDQ
GIALFFKGPN SFTGEDVLEL QGHGGQIVLD MLIKRVMEVG GIRIAKPGEF SEQAFMNDKL
DLTQAEAIAD LIDATSEQAA KSALQSLQGE FSKEVHELVD QVTNLRLYVE AAIDFPDEEV
DFLSDGKIAN ALYKIIDKLD LVQASAKQGS IIREGMKVVI AGRPNAGKSS LLNALAGKES
AIVTEIAGTT RDVLREHIHL DGMPLHIIDT AGLRDTTDTV EQIGIERAWN EINSADRVLF
MVDGTTTAAV DPHTIWPDFV DRLPSNLGVT VIRNKADLTG EDLMMTEEQG YSVYRISAKT
GLGVEELKQH LKSLMGYQSN LEGGFIARRR HLEALELAAG HLQLGKEQLE VYLAGELLAE
ELRMCQLALS EITGRFTSDD LLGKIFSSFC IGK
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