| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4362 |
|---|
| Symbol | |
|---|
| ID | 5373334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 5209084 |
|---|
| End bp | 5211204 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640832628 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001368539 |
|---|
| Protein GI | 153002858 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000023504 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTATTTA AATATTCAGT TTTAGGTTTG GCCGTAGGTT CGGCATTAAT GGCTATGCCT
GTGTTGGCAG AGGTGGCTAG CGACGCGAAT ATCGAGCGCA TTAATGTCAC CGGCCGCACT
TTTAACGATT ATAAAGTGGG TACAGCATCA GGCGCCATGC GCGGTGATAT CGACTTAATG
GATACCCCAC AATCAGTTAA TGTGATCCCC GATTTTGTCA CGGACGAACA GCTGGCGACT
AACCTCGCTG AAGTGTTAGT TAATGATTCC TCTATCACTG CAGGAACCCA GCGTTGGAAC
CGCCAAGTTT TTAGCATCCG TGGCTTCGAG TTAGATTCTG GTAATGGTTA TCTCATCAAT
GGCCATCAGC AATGGTCCCA TTACGTACAA CCCATCGAAA CCCTGCAGCA AGTCGAAGTG
TTAAAAGGCC CTTCGAGCAT GTTGTATGGT CAATCTGGCC CTGGTGGTTT AGTGAATATG
GTCACTAAGA AACCAACCTA TGATTCAATG CTTAACTTAG GTTTTGATAC CGATGGCTAC
GGTTCTACCC GTGCACAGCT CGATGCGGGT GGCAGTTTAA ACGAAGCACA AAGTATTCGT
TACCGCGGTG TGTTAGTGAA GCAAGATACA AAATACTGGC GTGAGTATTC CGCTAATGAT
GAGAACCAAG AGCGCGATCG CTGGTTAGGT TATCTCAACA TGGAATTTGA CCTAAGCGAC
GATTTGTTAC TGTCGGTTAA ATACGACCAT ACCCAAGATA AAGCGGATAT CGATGCGGGT
GGTTGGTTAG ATAAACAAGG TAATGTCATT GGCGAACGTA AAACCGTTTG GGATGCGCCT
TGGGCCTTTA CTGACAATAC AGTGTCAAAC TTAGGTGCCG ATCTGACTTG GCATATGAGT
GACAACTGGA AAGTCAAAGC GGGTTATAAC GATCAGCAGT TTAATCGCCA ACGTTTTGAT
TCTGCGCCAA GTTTGATTGA AGGCTCCGAA GATCCATTCA AGGATGGTTA TAAGATTAAA
CCCTTCGATC GTTACGATGA TTGGCAGCAT AAAACCGCTT ATGCCGATTT CACCGGTGAA
TTTGCGTTGG CGGGAATGCA GCATCAACTG CTGATTGGGG CTAACTATCT CGATTATTTC
TATCAGCAAC AAATTCACCG TGGGGCAGCT CAAACGGTTA TTCCTGGGCA GCCTATTACT
CAGCCTGCTC TCGATTACCA CACAAAACCC AAAGGTAACG CGAGTACCTA TAAGTATTAC
GGTTTCTACC TGCAGGATTT AATGACGCTT AATGAACAAT GGAAGTTACT TGCAGGTGTA
CGTTACGACG AACAGAAGAA AGACGCTATA GGTGGGAACA GCTATGCCGT GTCGCCTAAG
TTTGGGGTGA TTTATTCGCC AATGGCTAAT GGCAGTATTT ACATTAATTA TTCAAAAAGC
TTTACACCAC AGGGTTCAGT GACAAGTTCA GAAGATGTAA ATGAAGGAGA TAACCTTAAG
CCTGAATACG GTACTCAATA TGAATTAGGG ACTAAGTGGG AGTTGTTTGA TGACAGCCTA
CTGTTAACAG CAGCACTTTT TGATATTACG GTTTCTAATG TCACCATAGA GCAAGATATT
CCCGAAACGA GTGATGGCAA GAAAACTATT ACTACTCAAG GTGGCGAGCA GCATCACCGC
GGTTTTGAAG TTGGTGCCCA AGGTCAGTTA GGTGAAAGCT GGTTTGTGAC TTCTTCTATG
ATGTATTTAG ATGCCGAATA TAAAACGGGT GCTGGCAAGA TCGATGGGAA AATCTTAGAT
GGTAAAACAC CTGTCGATGC GCCTGAATGG TCGGCGAATA TCTGGACCCG TTATGAAGTG
ACTGATAACT TTGCTATGAA CTTTGGTGCC ATTTATGTGG GTGATCGCTT CGCCGATAAA
GATAACAGCA TTACTAAAGG CGGCTATGTG CGCTTCGATA TAGGTGCAGC CTACACTATG
GATATCATGG GTAAAGATGT GAGCCTTCGT GCCAACGTCA GAAACCTATT CGATACTGAA
TATTTAGACG GTGGCAGCGA TAAGATGGTG ACTATCGGCC AAGGCCGTAA CTTTAGTGTT
GCCGTCGAAG CTAAGTTCTA A
|
|---|
| Protein sequence | MLFKYSVLGL AVGSALMAMP VLAEVASDAN IERINVTGRT FNDYKVGTAS GAMRGDIDLM
DTPQSVNVIP DFVTDEQLAT NLAEVLVNDS SITAGTQRWN RQVFSIRGFE LDSGNGYLIN
GHQQWSHYVQ PIETLQQVEV LKGPSSMLYG QSGPGGLVNM VTKKPTYDSM LNLGFDTDGY
GSTRAQLDAG GSLNEAQSIR YRGVLVKQDT KYWREYSAND ENQERDRWLG YLNMEFDLSD
DLLLSVKYDH TQDKADIDAG GWLDKQGNVI GERKTVWDAP WAFTDNTVSN LGADLTWHMS
DNWKVKAGYN DQQFNRQRFD SAPSLIEGSE DPFKDGYKIK PFDRYDDWQH KTAYADFTGE
FALAGMQHQL LIGANYLDYF YQQQIHRGAA QTVIPGQPIT QPALDYHTKP KGNASTYKYY
GFYLQDLMTL NEQWKLLAGV RYDEQKKDAI GGNSYAVSPK FGVIYSPMAN GSIYINYSKS
FTPQGSVTSS EDVNEGDNLK PEYGTQYELG TKWELFDDSL LLTAALFDIT VSNVTIEQDI
PETSDGKKTI TTQGGEQHHR GFEVGAQGQL GESWFVTSSM MYLDAEYKTG AGKIDGKILD
GKTPVDAPEW SANIWTRYEV TDNFAMNFGA IYVGDRFADK DNSITKGGYV RFDIGAAYTM
DIMGKDVSLR ANVRNLFDTE YLDGGSDKMV TIGQGRNFSV AVEAKF
|
|---|
| |