| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4250 |
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| Symbol | |
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| ID | 5372707 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 5064063 |
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| End bp | 5067197 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640832515 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001368429 |
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| Protein GI | 153002748 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.278751 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGTT TTTTTATTGA TCGCCCCATC TTTGCGTGGG TGATCGCCTT GATTATTATG
CTGGCGGGGA TCCTCTCGAT CCGCTCGCTG CCAGTGTCTC AATATCCTAA CATTGCACCA
CCGACCGTGG TGATCAGTGC TAACTATCCT GGCGCTTCCG CTAAGATTGT TGAAGATTCT
GTGACTCAGG TGATTGAGCA ACGTATGACG GGTATCGATC ACCTCCGTTA TATCTCCTCA
ACCAGTGACA GTTTTGGTAA TGCGTCTATT ACCTTAACCT TCAACGCCGA AGCCGATCCG
GATATTGCAC AGGTTCAAGT TCAGAACAAG TTACAGGGCG CTATGACCCT GTTACCACAA
GAAGTGCAGT CGCAAGGGGT TAACGTTAAC AAGTCGAGTT CAGGCTTCTT AATGGTATTA
GGCTTCGTAT CGACCGACGG TTCGTTAGAT AAAGGCGATA TCGCCGACTA TGTTGGTGCG
AACATTCAAG ATCCTATGAG CCGTGTTCCT GGTGTAGGTG AGATTCAGTT GTTCGGTGCC
CAATATGCGA TGCGTATATG GCTAGATCCG TTGAAGTTGA CTCAATATAA TTTAACTAGC
TTAGATGTTA TTGCGGCGAT TCGTTCTCAA AACGCTCAAG TCTCCGCTGG ACAGTTAGGT
GGCGCGCCAT CTGTGGCTGG CCAAGAGCTG AACGCGACTG TATCGGCGCA AAGTCGTTTA
CAAACGGCGG AAGAGTTTCG CAAGATTATC CTTAAATCGG ATATTTCAGG TGCAAATGTC
TTCCTCGGTG ATGTGGCGCG AGTTGAGTTA GGTTCTGAAA GTTATGCCGT GGTGTCATTG
TATAATGGTC AACCTGCAAC AGGGTTAGCG ATTAAGCTGG CAACGGGTGC TAACGCGCTG
GATACCGCAT CAGCGGTTCG TGAAAAAATT GCTGAAATGA AGCCTTTCTT CCCGCAGGGG
TTAGAAGTGG TTTATCCATA CGATACAACG CCTTTCGTTG AGCAATCTAT CGAAGGTGTG
GTGCATACCT TGCTTGAAGC GATCGTACTT GTATTCGTTA TCATGTACCT CTTCCTGCAG
AACTTCCGTG CAACCTTGAT CCCGACTATT GCAGTGCCTG TGGTATTGCT GGGTACCTTT
GCGATTCTAT CGATGGCGGG TTTCTCGATT AACACCCTAA CCATGTTCGC TATGGTGCTC
GCCATCGGTT TGCTGGTGGA CGATGCGATT GTGGTGGTGG AAAACGTCGA GCGGGTGATG
TCCGAAGAGG GCTTAAGTCC ACTCGAAGCG ACGCGTAAGT CGATGGACCA AATTACTGGT
GCCTTAGTCG GTATTGGTCT GACCCTATCT GCTGTGTTTG TACCTATGGC ATTTATGTCT
GGTTCAACGG GTGTGATCTA CCGTCAGTTC TCTATCACTA TTGTCTCTGC GATGGCGCTG
TCTGTACTGG TGGCGTTGAT TTTAACGCCA GCACTGTGTG CGACTATGCT CAAGCCTGTC
AAGAAGGGCC ATGGTCACAT AGAAACAGGC TTCTTCGGTT GGTTTAACCG TACTTTCGAC
AAGCTGACTA ACCGTTATGA ATCGAGCGTG GCTGGTATCA TCAAGCGCAG CTTCAGAGTC
ATGACGATTT ACGTTGTGCT GGTTATTGCA GTGGGTTGGA TCTTCATCCG TATGCCTACC
GCCTTCTTGC CAGACGAAGA CCAAGGTATT TTGTTTACCC AAGCTATTTT GCCGACTAAC
TCAACTCAAG AAAGCACCCT AAAAGTATTG GAGAAAGTCT CTGATCACTT TATGGCTGAA
GAAGGCGTGA GATCGGTATT TAGCGTGGCG GGCTTCAGTT TTGCTGGTCA AGGGCAAAAC
ATGGGTATCG CTTTCGTTGG CTTGAAGGAT TGGTCTGAGC GTGAAGCGCC AGGCATGGAT
GTTAAGTCTA TTGCGGGTCG CGCCATGGGT GTGTTCGGCC AGATGAAAGA TGCTTTAGTC
TTCGCCTTCG TACCGCCTGC GGTTATCGAG TTGGGTACGG CGAACGGTTT CGACATGTAC
TTGCAGGATA AGAACGGCCA AGGTCACGAG AAGTTAGTGG CGGCACGTAA CCAACTGCTG
GGCATGGCGG CACAGAATCC AAATCTGGTG GGTGTGCGTC CTAACGGCCA AGAAGATGCG
CCGATTTATC AATTACATGT AGATCACGCT AAGTTAAGCG CGTTAGGCAT TGAAATCACT
AATGTGAACA GTGTGCTTGC CACGGCTTGG GGTGGTTCTT ATGTGAACGA CTTTATTGAC
CGCGGCCGCG TGAAGAAAGT GTATGTGCAA GGTGATGCCC AGTATCGTAT GCAACCAGGA
GATTTAGACA CTTGGTATGT GCGTAACAAC AAGGGCGACA TGGTGCCATT CTCAGCCTTT
GCGACGGGTA CATGGGAATA CGGTTCTCCA CGTCTAGAGC GCTTTAACGG CTTACCGTCG
ATGAACATTC AGGGTGCTAC GGCTCCTGGG TTCAGTACCG GCGCGGCGAT GGAAATCATG
GAAGACCTTG CTAAGCAGCT TCCTCCTGGC TTTGGTGTCG AGTGGAACGG CTTATCGTAC
GAAGAGCGTC TATCGGGTAA CCAAGCGCCT GCGCTGTATG CCCTGTCGAT CTTAGTGGTG
TTCCTCGTAC TGGCGGCACT CTATGAGAGC TGGTCGGTGC CGTTTGCTGT TGTGCTGGTG
GTGCCACTCG GGATCATCGG TGCCTTAGTT GCCATGAACG GTCGCGGCTT GCCAAACGAC
GTGTTCTTCC AAGTGGGGCT GTTAACCACA GTGGGCTTAG CAACCAAGAA TGCCATCTTG
ATTGTGGAAT TCGCGAAAGA GTTCTACGAG AAAGGTTCAG GCTTAGTCGA GGCGACCTTG
CATGCTGTAC GTGTGCGTTT GCGTCCTATT CTGATGACGT CTCTTGCCTT TGGTTTAGGT
GTTGTGCCAT TAGCCATTAG CTCGGGTGTG GGTTCTGGTA GCCAAAACGC CATCGGTACT
GCGGTACTTG GCGGTATGAT GAGCTCGACT TTCCTAGGTA TCTTCTTCGT ACCATTATTC
TTCGTGATAG TGGAGCGTAT CTTCAGTAAG CGTGAGAAGA AAGGTAAAGA AGAGAAGCCA
AACTCAGCTG AGTAA
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| Protein sequence | MARFFIDRPI FAWVIALIIM LAGILSIRSL PVSQYPNIAP PTVVISANYP GASAKIVEDS
VTQVIEQRMT GIDHLRYISS TSDSFGNASI TLTFNAEADP DIAQVQVQNK LQGAMTLLPQ
EVQSQGVNVN KSSSGFLMVL GFVSTDGSLD KGDIADYVGA NIQDPMSRVP GVGEIQLFGA
QYAMRIWLDP LKLTQYNLTS LDVIAAIRSQ NAQVSAGQLG GAPSVAGQEL NATVSAQSRL
QTAEEFRKII LKSDISGANV FLGDVARVEL GSESYAVVSL YNGQPATGLA IKLATGANAL
DTASAVREKI AEMKPFFPQG LEVVYPYDTT PFVEQSIEGV VHTLLEAIVL VFVIMYLFLQ
NFRATLIPTI AVPVVLLGTF AILSMAGFSI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
SEEGLSPLEA TRKSMDQITG ALVGIGLTLS AVFVPMAFMS GSTGVIYRQF SITIVSAMAL
SVLVALILTP ALCATMLKPV KKGHGHIETG FFGWFNRTFD KLTNRYESSV AGIIKRSFRV
MTIYVVLVIA VGWIFIRMPT AFLPDEDQGI LFTQAILPTN STQESTLKVL EKVSDHFMAE
EGVRSVFSVA GFSFAGQGQN MGIAFVGLKD WSEREAPGMD VKSIAGRAMG VFGQMKDALV
FAFVPPAVIE LGTANGFDMY LQDKNGQGHE KLVAARNQLL GMAAQNPNLV GVRPNGQEDA
PIYQLHVDHA KLSALGIEIT NVNSVLATAW GGSYVNDFID RGRVKKVYVQ GDAQYRMQPG
DLDTWYVRNN KGDMVPFSAF ATGTWEYGSP RLERFNGLPS MNIQGATAPG FSTGAAMEIM
EDLAKQLPPG FGVEWNGLSY EERLSGNQAP ALYALSILVV FLVLAALYES WSVPFAVVLV
VPLGIIGALV AMNGRGLPND VFFQVGLLTT VGLATKNAIL IVEFAKEFYE KGSGLVEATL
HAVRVRLRPI LMTSLAFGLG VVPLAISSGV GSGSQNAIGT AVLGGMMSST FLGIFFVPLF
FVIVERIFSK REKKGKEEKP NSAE
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