Gene Shew185_4238 details

Gene Information

• Locus tag: Shew185_4238
• ID: 5372846
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 5052560
• End bp: 5053030
• Gene Length: 471 bp
• Protein Length: 156 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640832503
• Product: biopolymer transport protein ExbD/TolR
• Protein accession: YP_001368417
• Protein GI: 153002736
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0848] Biopolymer transport protein

Plasmid Coverage information

• Num covering plasmid clones: 51
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGCGC CCTTTAGTCA ACGACCAAGA CTCACGGCTC ATCCTTCAAA ACGTAAAGCT 
GTGATTAGCT TAACGCCACT CATTGATGTG GTGTTTATCC TATTGGTGTT TTTTATGCTG 
TCTTCCAGTT TTCTAGACTG GCGCACTGTG GCGCTCGATA CCAGCACGGC AGGTAGCCCC 
GCTCCCGCTG AGCAAGCGCC ATTTTTAGTA CAAATTAGCG CAGACCAACT GCAACTAAAC 
GGCGAAACGA TCACACTGGA AGCATTACAG CAAAAAGCAC AAGGGCGCCA GCCTGCAAGC 
CAAATGGTGA GCCTACAGCC GCAGGCGGAT ACTCCAGTAC AAAGGTTAGT ACAGGTATTA 
GATGCACTTA ATGCCGCAGG GATTGCGCCG CTAACACTGG TAGAAGACTC CAATTGGCAA 
CCCGCACCTG CGACGAAAGC GGACGGCAAT AATATGGAGA ACAGCCACTA A 

 

Protein sequence

MQAPFSQRPR LTAHPSKRKA VISLTPLIDV VFILLVFFML SSSFLDWRTV ALDTSTAGSP 
APAEQAPFLV QISADQLQLN GETITLEALQ QKAQGRQPAS QMVSLQPQAD TPVQRLVQVL 
DALNAAGIAP LTLVEDSNWQ PAPATKADGN NMENSH