Gene Shew185_4085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_4085 
Symbol 
ID5372568 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp4865896 
End bp4867947 
Gene Length2052 bp 
Protein Length683 aa 
Translation table11 
GC content44% 
IMG OID640832348 
Producttype IV pilus secretin PilQ 
Protein accessionYP_001368265 
Protein GI153002584 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4796] Type II secretory pathway, component HofQ 
TIGRFAM ID[TIGR02515] type IV pilus secretin (or competence protein) PilQ 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000349051 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATCTT CTGCCGCGAT AAAAGTCCCG TTAATTTCTT CAGGCTTAAT CAAGTCTGTT 
ATAGGGATCG CACTGGTATT TGGAATTTTG CCATCGAGTT TTGCGGCAAA TCGATTAATG
GATGTTAAAT ACCATGCTTT GGTTGATCAT CAATTGGAGC TCGAGCTGGT CTTTGAAGAG
GCGGTCGCTC CGCCTTCAAT AGATTCAAAT GCCTCGCCCG CAGAGCTAGT GCTGACCTTC
GATAACACTA TCTCAGGTTT ATCTAAGGAT CGTTTACCTA TTAATCAGGT TGGGGTGACA
GACATCACCA CTGAGCAGCA AGATACTCGT CTTAAAGTCA TCTTAGGTAT GTCCAAAGTG
AAACCTTACC AAGGTTCTGT CATGGGCAAT TCATATCGAT TAACAATCAA CGATGAAGTG
GCGGGTACTC AAGCCCAAGC TGAAAACCCT TTCGTTAATA GCATTAAAAA TATCGATTTT
CGTCGTAATG ATAATGGTGG CGGTGAGCTA TTAGTCTATC TAAATAATCG CTCGGTTGCG
GCTAATGTCG AGCAAGTGGG CGCTAAGCTC GAAGTGAAGT TATATAACAC AGATATTAAT
AACGATCTTC TGTATGTTAT GGATGTGAAA GATTTCTCCA CGCCAGTAAA AAGCTTCGAG
ACATTTAAAG AAGATTTAAC GGCGCGTATT GTCGTCGATA TTACGGGTGA GTATGAATTC
ACTTACAAGC AAGAAGATAA CCTCTTTAGA CTCTCAATGA ATAAAGTCGA GAGGGCCGCC
GCCAAGAAAG ATGTTAAAAA ATACAATGGC CGGACTTTGT CGCTTAACTT CCAAAATATC
CCAGTGCGCA CTGTGTTGCA GATCATCGCC GACTATAATA ACTTTAACTT AGTCACCAGC
GATACTGTGG AAGGCAATAT CACCTTAAGA TTGGACGATG TGCCTTGGGA TCAAGCTTTA
GAATTAATTC TGCAAACCAA AGGATTAGAT AAGCGTATCG AAGGTAACAT CTTAATGGTG
GCGCCGAGCG AAGAACTGGC AATTCGTGAA AGCCAGAACC TCAAAAACAA ACAAGAGGTT
AAAGAGTTAG CACCGCTCTA TTCTGAGTAC TTGCAAATTA ACTACGCTAA AGCGGTCGAT
ATTGCTGAGT TATTGAAAAG CGCGGATTCA AGCTTACTTT CACCACGCGG TTCAGTCGCG
GTCGATGAAC GTACTAACAC AGTGTTAGTG AAAGATACGG CTGAAACGAT TGAGAACATT
CACCGTTTAG TCGAAGTGCT CGATATCCCC ATCCGCCAAG TGTTGATCGA GTCACGTATG
GTGACAGTGA AAGACGATGT CTCCGAAGAC TTAGGTATTC GTTGGGGCGT CACAGATCAG
CAGGGTAGTA AGGGAACCTC AGGCACATTA GAAGGTGCAC AGAGTATTGC CAATGGGATT
ATTCCTACTC CCGATCAGCG TTTGAACGTT AACTTACCCG CGGCAGCCAC CAATCCAGCG
AGTATTGCCT TCCATGTCGC TAAATTGGCG GACGGTACCA TTCTTGATTT GGAATTAAGT
GCGCTAGAGC AAGAAAACAA AGGTGAAATC ATCGCTAGCC CTCGTATTAC CACCTCTAAC
CAAAAGGCGG CTTATATTGA GCAAGGTGTC GAGATCCCTT ATGTGCAGTC GACTTCGAGT
GGTGCAACGT CAGTCACGTT TAAGAAGGCG GTGTTGTCTC TACGGGTTAC ACCCCAAATT
ACGCCTGATA ACCGAGTCAT TTTAGATTTA GAAATCACTC AAGATTCTCA GGGTAAAACC
GTTGATACTC CAACGGGTCC CGCAGTTGCC ATCGATACTC AACGCATCGG CACCCAAGTG
CTCGTTAATA ACGGCGAAAC CATAGTGCTT GGCGGTATTT ATCAGCAAAA TCTGATCAGC
CGTGTGAGTA AAGTACCAAT TCTAGGTGAC ATTCCTCTGG TTGGTTTCCT GTTTAGGAAC
ACAACAGACA AAAATGAGCG TCAAGAGCTA CTTATTTTCG TCACCCCCAA AATAGTCGGT
GAGAAGATCT AA
 
Protein sequence
MKSSAAIKVP LISSGLIKSV IGIALVFGIL PSSFAANRLM DVKYHALVDH QLELELVFEE 
AVAPPSIDSN ASPAELVLTF DNTISGLSKD RLPINQVGVT DITTEQQDTR LKVILGMSKV
KPYQGSVMGN SYRLTINDEV AGTQAQAENP FVNSIKNIDF RRNDNGGGEL LVYLNNRSVA
ANVEQVGAKL EVKLYNTDIN NDLLYVMDVK DFSTPVKSFE TFKEDLTARI VVDITGEYEF
TYKQEDNLFR LSMNKVERAA AKKDVKKYNG RTLSLNFQNI PVRTVLQIIA DYNNFNLVTS
DTVEGNITLR LDDVPWDQAL ELILQTKGLD KRIEGNILMV APSEELAIRE SQNLKNKQEV
KELAPLYSEY LQINYAKAVD IAELLKSADS SLLSPRGSVA VDERTNTVLV KDTAETIENI
HRLVEVLDIP IRQVLIESRM VTVKDDVSED LGIRWGVTDQ QGSKGTSGTL EGAQSIANGI
IPTPDQRLNV NLPAAATNPA SIAFHVAKLA DGTILDLELS ALEQENKGEI IASPRITTSN
QKAAYIEQGV EIPYVQSTSS GATSVTFKKA VLSLRVTPQI TPDNRVILDL EITQDSQGKT
VDTPTGPAVA IDTQRIGTQV LVNNGETIVL GGIYQQNLIS RVSKVPILGD IPLVGFLFRN
TTDKNERQEL LIFVTPKIVG EKI