Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_4085 |
Symbol | |
ID | 5372568 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 4865896 |
End bp | 4867947 |
Gene Length | 2052 bp |
Protein Length | 683 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640832348 |
Product | type IV pilus secretin PilQ |
Protein accession | YP_001368265 |
Protein GI | 153002584 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000349051 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATCTT CTGCCGCGAT AAAAGTCCCG TTAATTTCTT CAGGCTTAAT CAAGTCTGTT ATAGGGATCG CACTGGTATT TGGAATTTTG CCATCGAGTT TTGCGGCAAA TCGATTAATG GATGTTAAAT ACCATGCTTT GGTTGATCAT CAATTGGAGC TCGAGCTGGT CTTTGAAGAG GCGGTCGCTC CGCCTTCAAT AGATTCAAAT GCCTCGCCCG CAGAGCTAGT GCTGACCTTC GATAACACTA TCTCAGGTTT ATCTAAGGAT CGTTTACCTA TTAATCAGGT TGGGGTGACA GACATCACCA CTGAGCAGCA AGATACTCGT CTTAAAGTCA TCTTAGGTAT GTCCAAAGTG AAACCTTACC AAGGTTCTGT CATGGGCAAT TCATATCGAT TAACAATCAA CGATGAAGTG GCGGGTACTC AAGCCCAAGC TGAAAACCCT TTCGTTAATA GCATTAAAAA TATCGATTTT CGTCGTAATG ATAATGGTGG CGGTGAGCTA TTAGTCTATC TAAATAATCG CTCGGTTGCG GCTAATGTCG AGCAAGTGGG CGCTAAGCTC GAAGTGAAGT TATATAACAC AGATATTAAT AACGATCTTC TGTATGTTAT GGATGTGAAA GATTTCTCCA CGCCAGTAAA AAGCTTCGAG ACATTTAAAG AAGATTTAAC GGCGCGTATT GTCGTCGATA TTACGGGTGA GTATGAATTC ACTTACAAGC AAGAAGATAA CCTCTTTAGA CTCTCAATGA ATAAAGTCGA GAGGGCCGCC GCCAAGAAAG ATGTTAAAAA ATACAATGGC CGGACTTTGT CGCTTAACTT CCAAAATATC CCAGTGCGCA CTGTGTTGCA GATCATCGCC GACTATAATA ACTTTAACTT AGTCACCAGC GATACTGTGG AAGGCAATAT CACCTTAAGA TTGGACGATG TGCCTTGGGA TCAAGCTTTA GAATTAATTC TGCAAACCAA AGGATTAGAT AAGCGTATCG AAGGTAACAT CTTAATGGTG GCGCCGAGCG AAGAACTGGC AATTCGTGAA AGCCAGAACC TCAAAAACAA ACAAGAGGTT AAAGAGTTAG CACCGCTCTA TTCTGAGTAC TTGCAAATTA ACTACGCTAA AGCGGTCGAT ATTGCTGAGT TATTGAAAAG CGCGGATTCA AGCTTACTTT CACCACGCGG TTCAGTCGCG GTCGATGAAC GTACTAACAC AGTGTTAGTG AAAGATACGG CTGAAACGAT TGAGAACATT CACCGTTTAG TCGAAGTGCT CGATATCCCC ATCCGCCAAG TGTTGATCGA GTCACGTATG GTGACAGTGA AAGACGATGT CTCCGAAGAC TTAGGTATTC GTTGGGGCGT CACAGATCAG CAGGGTAGTA AGGGAACCTC AGGCACATTA GAAGGTGCAC AGAGTATTGC CAATGGGATT ATTCCTACTC CCGATCAGCG TTTGAACGTT AACTTACCCG CGGCAGCCAC CAATCCAGCG AGTATTGCCT TCCATGTCGC TAAATTGGCG GACGGTACCA TTCTTGATTT GGAATTAAGT GCGCTAGAGC AAGAAAACAA AGGTGAAATC ATCGCTAGCC CTCGTATTAC CACCTCTAAC CAAAAGGCGG CTTATATTGA GCAAGGTGTC GAGATCCCTT ATGTGCAGTC GACTTCGAGT GGTGCAACGT CAGTCACGTT TAAGAAGGCG GTGTTGTCTC TACGGGTTAC ACCCCAAATT ACGCCTGATA ACCGAGTCAT TTTAGATTTA GAAATCACTC AAGATTCTCA GGGTAAAACC GTTGATACTC CAACGGGTCC CGCAGTTGCC ATCGATACTC AACGCATCGG CACCCAAGTG CTCGTTAATA ACGGCGAAAC CATAGTGCTT GGCGGTATTT ATCAGCAAAA TCTGATCAGC CGTGTGAGTA AAGTACCAAT TCTAGGTGAC ATTCCTCTGG TTGGTTTCCT GTTTAGGAAC ACAACAGACA AAAATGAGCG TCAAGAGCTA CTTATTTTCG TCACCCCCAA AATAGTCGGT GAGAAGATCT AA
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Protein sequence | MKSSAAIKVP LISSGLIKSV IGIALVFGIL PSSFAANRLM DVKYHALVDH QLELELVFEE AVAPPSIDSN ASPAELVLTF DNTISGLSKD RLPINQVGVT DITTEQQDTR LKVILGMSKV KPYQGSVMGN SYRLTINDEV AGTQAQAENP FVNSIKNIDF RRNDNGGGEL LVYLNNRSVA ANVEQVGAKL EVKLYNTDIN NDLLYVMDVK DFSTPVKSFE TFKEDLTARI VVDITGEYEF TYKQEDNLFR LSMNKVERAA AKKDVKKYNG RTLSLNFQNI PVRTVLQIIA DYNNFNLVTS DTVEGNITLR LDDVPWDQAL ELILQTKGLD KRIEGNILMV APSEELAIRE SQNLKNKQEV KELAPLYSEY LQINYAKAVD IAELLKSADS SLLSPRGSVA VDERTNTVLV KDTAETIENI HRLVEVLDIP IRQVLIESRM VTVKDDVSED LGIRWGVTDQ QGSKGTSGTL EGAQSIANGI IPTPDQRLNV NLPAAATNPA SIAFHVAKLA DGTILDLELS ALEQENKGEI IASPRITTSN QKAAYIEQGV EIPYVQSTSS GATSVTFKKA VLSLRVTPQI TPDNRVILDL EITQDSQGKT VDTPTGPAVA IDTQRIGTQV LVNNGETIVL GGIYQQNLIS RVSKVPILGD IPLVGFLFRN TTDKNERQEL LIFVTPKIVG EKI
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