| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_4055 |
|---|
| Symbol | |
|---|
| ID | 5370243 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4836788 |
|---|
| End bp | 4837942 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640832318 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001368236 |
|---|
| Protein GI | 153002555 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGA CTTGTCTCGC CTTAGTGTTA CCTATGCTAT TAACGGCCAC CAGCAGTCAG
GCGGTTGAGC TCTATAAAGA TCAAAAAAAT ACATTAGATT TAACCGGTTG GTTGGGGTTT
GTCGCCCTGA ATGACAGCCA CGATACCTCG GTTATCGACG ATTCTTCACG CTTAAGATTT
AGCTTCGAGC GCAGTGAGAG AAACGGCTGG ACTGCCTTCG CCACCACAGA ATGGGGGATC
AATATGGTCT CCAGCGACGA TGGTTTAGTG ATGCAAGGGG GCAAACTCGC CGCCGAAAAG
ACCGATGACT TTCTCTATAA CCGCTTAGGT TATGTCGGCA TGTCCCACGA TGTCTGGGGG
AGTTTGAGCT TTGGTAAACA ATGGGGCGCC TATTACGATG TCGCCGGCAC CACAGATTTA
CCCAACGTTT TCGCCGGTTA CAGCGTTGGT GCTTACACCT TTGGCGATGG CGGCCTCACC
GGCACTGGCC GTGCCGACTC CGCCTTTATT TACCGCAATA GTGTCGGCCC AGTGCAAATC
GCCTTGCAAT ATGCCGCCAA AACCAATGGC GATGTCAGCT TAAAAAATGA TGACGGCAGC
GAAATGAGTA ACTCTGAGTT GAGTTTCGAC AGCAGTTACG GCGCCAGCAT CACCTATGCG
GCAACCGACA AATTCAAGCT ACTCGCAGGC TTTAACCGCG GTGATTTTGA AGGCCACTTA
GGTAATACCC AAGTCGATGA GACCAATGAA ATTATTGGCA TTGGTGCCAT GTATGGTGAC
TACTACCACT ATGCCGAAGG ACGCGAAGCC AGCGGTCTTT ATGTGGGTTT TAACGCTCAC
CAAAGTAAGA GTAATGAACT GGTCAATGGT GATCTCTACG ACGCCACTGG TGCCGAGTTG
ATGACGGCCT ATCAATTCGA CAACGGTTTT GTGCCTATGG TCGTGCTCAG TTATTTAGAT
TTAGACACAG ATGCAACTAC GCCTATTCAA GGTAATTGGA CCCGCCAATT TGCCATGCTG
GGTCTGCACT ATCGCTATAG CAACGATACC GTGATGTTTG CTGAAATGAA GTTAGATTTC
AGTGATATGG ATGATGCCGC GCTTGAAGCG CAGGAAGACA ACAGCTTCGC CGTCGGGATT
AATTACTTCT TTTAA
|
|---|
| Protein sequence | MNKTCLALVL PMLLTATSSQ AVELYKDQKN TLDLTGWLGF VALNDSHDTS VIDDSSRLRF
SFERSERNGW TAFATTEWGI NMVSSDDGLV MQGGKLAAEK TDDFLYNRLG YVGMSHDVWG
SLSFGKQWGA YYDVAGTTDL PNVFAGYSVG AYTFGDGGLT GTGRADSAFI YRNSVGPVQI
ALQYAAKTNG DVSLKNDDGS EMSNSELSFD SSYGASITYA ATDKFKLLAG FNRGDFEGHL
GNTQVDETNE IIGIGAMYGD YYHYAEGREA SGLYVGFNAH QSKSNELVNG DLYDATGAEL
MTAYQFDNGF VPMVVLSYLD LDTDATTPIQ GNWTRQFAML GLHYRYSNDT VMFAEMKLDF
SDMDDAALEA QEDNSFAVGI NYFF
|
|---|
| |