Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3803 |
Symbol | |
ID | 5372129 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 4520701 |
End bp | 4522350 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640832064 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001367990 |
Protein GI | 153002309 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.717222 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCATCGCT ACCTCGCTCT AGTGTTTGCC CTGTTTATCC CATTATTAAG TCTCTCATCC CCAGCGCAAG CCGAACCTGT CGCGGCAACC GAAAGTACAT CAACCACACC TGTGGCGGTC AAAGCCGAAC TGGCTATGTT GCAACAAGCT ATCGATACCG ATATCCATAA GCTGAAACAT GCCAAAGGTG AGTTGAAAAC GATTGTCGAA TATCGCATTC AAAACAAAAC CTTACAATTA CGTAATAAGA TTAAAGATTT GCTCGAAGCA ACGCCGATCG ACAGTGCTTT TCTGCAGCCA TTAATCCAAG GGCAATTGAA CTACATCCAA CAGATTGATA CCTATATCGA TGACAACATT GATAAATTGG AGCTGCAACT AGGCTCGGGT ACAGATGATT CGATTCTGCT CGATATCTCT AAGCGCGAAT TAGACAAAGA CACCTATTAC AAACAGCAAC TCGAGACACT CAATTGGCTC GAACAAGTTG GCCAAGATGT TAGCGAAGCA CAAAAGTCCC TGCTGCAAAT TTTGATTGCG CGTGCAGATA TGCTTGAAAG CTTAGTGACT TACACTCAGC AGCAACTGCA AGCTGCGGTC GATACCGCAA CCAATGCCGG TAAAGATGTC ACGTCGGCGC AAACTAGCCA CGTGATGATG CTAAAGGAGC GCTTGGCCCA AAATAGCCAA AGCTTAAATA TCGACATCAA CTTACTCGAT GCTTTAGGCC AAGACACCGC TGCGTTGAAA AAGACCTTGT TTAGTGTGTC AGGCGATATT ACTCAGGACG TATTGAGCTT TGATGTGGCC TCGAGCTTAG TCGAGCAGTG GCTGAACACG GCGCAGGAAC AAGCTATAAA TCATGGCCCT ACCGTCGTGT TTAAGTTGTT TGTATTCTGC TTGATCTTAA TTATCGCGGG TCTCGCCGGC AAGTTAGCCA AACAGATAGT GAAGAATACC GTTAGCAATT CCAAGTTGAA TTTGAGCAAG TTATTACAAG ACTTCTTCAC ATCGCTATCA GGCAAAGCCG TCTTTACCAT AGGACTCTTG GTCGCCCTGT CCCAGCTTGG GATCGAACTT GGGCCGCTAC TCGCAGGCTT TGGTATCGCG GGTGTGATTA TTGGTTTTGC CCTGCAAGAT ACCCTGTCGA ATTTTGCCTC TGGCATGATG ATCTTAATTT ATCGTCCCTA CGATGTGGGT GATTTGATCA ACGCCGCTGG CGTCACGGGT CGAGTGAGCC ACATGAGTCT GGTCTCGACT ACGATTAAAA CCATGGATAA CCAACGTCTT ATTATTCCTA ACAATAAGAT TTGGGGCGAC ACTATTAACA ACATCACGGC CGAGCACCAA CGTCGAGTGG ATATGACATT TGGTATTGGT TACAGCGACA ATATCGAACA TGCTGAAGCG ATTCTCAAAT CCATCGTCGA GGCGCATCCA AAGGTGCAAG CACTGCCAGC GCCAACGATT AAACTGCATC TGCTGGGTGA GTCTTCGGTC GACTTTATCG TGCGCCCTTG GGCGAAACCG GAAGATTATT GGGAAGTGTA TTGGGATATT ACCCGTGAAG TGAAAATGCG TTTCGACGCC GAAGGGATCA GTATTCCGTT CCCGCAGCGC GATGTGCATA TCTATCAAAC CACGAAGTAA
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Protein sequence | MHRYLALVFA LFIPLLSLSS PAQAEPVAAT ESTSTTPVAV KAELAMLQQA IDTDIHKLKH AKGELKTIVE YRIQNKTLQL RNKIKDLLEA TPIDSAFLQP LIQGQLNYIQ QIDTYIDDNI DKLELQLGSG TDDSILLDIS KRELDKDTYY KQQLETLNWL EQVGQDVSEA QKSLLQILIA RADMLESLVT YTQQQLQAAV DTATNAGKDV TSAQTSHVMM LKERLAQNSQ SLNIDINLLD ALGQDTAALK KTLFSVSGDI TQDVLSFDVA SSLVEQWLNT AQEQAINHGP TVVFKLFVFC LILIIAGLAG KLAKQIVKNT VSNSKLNLSK LLQDFFTSLS GKAVFTIGLL VALSQLGIEL GPLLAGFGIA GVIIGFALQD TLSNFASGMM ILIYRPYDVG DLINAAGVTG RVSHMSLVST TIKTMDNQRL IIPNNKIWGD TINNITAEHQ RRVDMTFGIG YSDNIEHAEA ILKSIVEAHP KVQALPAPTI KLHLLGESSV DFIVRPWAKP EDYWEVYWDI TREVKMRFDA EGISIPFPQR DVHIYQTTK
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