| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3776 |
|---|
| Symbol | psd |
|---|
| ID | 5369703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4486392 |
|---|
| End bp | 4487270 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640832037 |
|---|
| Product | phosphatidylserine decarboxylase |
|---|
| Protein accession | YP_001367963 |
|---|
| Protein GI | 153002282 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0688] Phosphatidylserine decarboxylase |
|---|
| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATAAAG TCAAAATTGC GCTGCAGTAC ATGCTGCCGA AACACTTATT ATCTCGTTTA
GTGGGTAAAC TCGCCGCAGC CGAAGCGGGC GCGTTAACCA CGGCCGCTAT CAAGTGGTTT
ATCAAGCAAT ATAAAATTGA TATGAGCGAA GCGGCGCAAA GTGAGCCTGA AGCCTATAAA
AGCTTTAATG CCTTTTTTAC CCGCGCCCTT AAACCCGGTA TTCGTCCGTT AGATATGGAC
GCCGATATCA TGGTGCATCC CGTCGATGGC GCCGTAAGCC AATTAGGCCC GATTAAAAAC
GGCCGCATCT TCCAAGCTAA GGGTCACCAC TATTCATCGT TAACCTTGCT TGGCGATCAA
GCTGAAGATG CTAAACGCTT CGAAGGCGGT GATTTTGCGA CTATTTATCT GGCGCCTAAA
GACTATCACC GTATCCACAT GCCGATTAAA GGCACGTTAT CAAAAATGAC TTACGTGCCT
GGTGAACTGT TTTCAGTGAA TCCGTTAACG GCCAGAAACG TACCCGGTCT CTTTGCCCGT
AACGAACGTG TGGTGGCGAT TTTCGAAACC GAATTAGGTC CATTAGCCAT GGTATTGGTT
GGCGCAACGA TTGTTGCCAG TATCGAAACG GTCTGGGCAG GCACAGTCAC GCCGCCGACA
GGTAAGCAAG TCTTCACTTG GGAATATCCA ACCCAAGGTC CCGATGCCAT CACCTTAGAC
AAGGGCGAAG AAATGGGTCG CTTCAAGTTA GGCAGTACTG TAGTGATGTT GTTTGCTAAA
GATGCTATCG CGACCTTTGC TGAAGGTGTC GAAGCCGAAG CTGTAACGCG TATGGGACAA
GCCTTCGCTA ACCTGAAAGA CGTTAAGCAC GCGGATTAA
|
|---|
| Protein sequence | MDKVKIALQY MLPKHLLSRL VGKLAAAEAG ALTTAAIKWF IKQYKIDMSE AAQSEPEAYK
SFNAFFTRAL KPGIRPLDMD ADIMVHPVDG AVSQLGPIKN GRIFQAKGHH YSSLTLLGDQ
AEDAKRFEGG DFATIYLAPK DYHRIHMPIK GTLSKMTYVP GELFSVNPLT ARNVPGLFAR
NERVVAIFET ELGPLAMVLV GATIVASIET VWAGTVTPPT GKQVFTWEYP TQGPDAITLD
KGEEMGRFKL GSTVVMLFAK DAIATFAEGV EAEAVTRMGQ AFANLKDVKH AD
|
|---|
| |