Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3583 |
Symbol | |
ID | 5372958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | + |
Start bp | 4261570 |
End bp | 4262247 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640831841 |
Product | pseudouridine synthase |
Protein accession | YP_001367771 |
Protein GI | 153002090 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTGATT TTATTTACCA ACCACCGACA ACTCCTTGGC TCGATATTCT TTATCAAGAT AAAGACATTA TCGTCATAAA CAAACCTTCG GGATTGTTGT CTGTGCCCGG TCGCGATCCT GCCCATTACG ACAGTGTCTA TGCTCGGGTA AAAGCTGAAC ATCCCCATAG CCAAATCGTC CACCGCCTCG ATATGGCGAC CTCAGGCGTG ATCGTTGTCG CCCTTATTCG TAGCGCCGAG CGTGAGTTAA AACGTCAGTT CCACGATAGA GAAACCAGCA AGACCTACTT TGCAAGGGTC GCTGGACATG TCAAAAATGA CACTGGTAGC GTTGATTATC CGCTGATCTG CGACTGGCCA AATCGCCCAA AACAGAAAGT CGATCATCTT GTGGGTAAAC CGTCTTTAAC TCACTACCAA GTAATAAGTC GTGCCAAACG CTCGACGCTG GTGAAACTCA CGCCAATCAC AGGCCGCTCA CACCAATTAC GCGTGCATAT GATGGCACTA GGTCATCCGA TCTTAGGTGA TGGTTTTTAT GCCGATCCAC TAGCCAAATC CTTAGCACCA CGCCTATTAC TGCATGCGGC AGAGCTCACC ATCAAACATC CTTACACGGG TGTCAGTATG ACTTTTAGCG CAGAAGTACC TTTTTGTGAG CCTTTGGGCG AACAATGA
|
Protein sequence | MTDFIYQPPT TPWLDILYQD KDIIVINKPS GLLSVPGRDP AHYDSVYARV KAEHPHSQIV HRLDMATSGV IVVALIRSAE RELKRQFHDR ETSKTYFARV AGHVKNDTGS VDYPLICDWP NRPKQKVDHL VGKPSLTHYQ VISRAKRSTL VKLTPITGRS HQLRVHMMAL GHPILGDGFY ADPLAKSLAP RLLLHAAELT IKHPYTGVSM TFSAEVPFCE PLGEQ
|
| |