| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3496 |
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| Symbol | rumB |
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| ID | 5370950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 4160878 |
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| End bp | 4162050 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640831756 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_001367686 |
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| Protein GI | 153002005 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGTGCTG CTATTGTGAA TGCCGTTAAG CAATGTGGTT ATTTTAATCA AGGTCAGTGC
CTTTCTTGCC GGCATATTCA GCAGCCTCTA GCGCAGCAAG TAGCGGTTAA AACCCAAACG
TTACAGCAAT TACTCGCGCC TTTTATTCCC GCAAATTCGG CAGAACTTTT TCTGCCTCCC
ATTACTGGCG ATGACAGCGG CTTTCGTAAT AAAGCCAAAA TGGTAGTACT CGGCGCCGCC
CATGAACCCG TGTTAGGGAT TGTAAGCCCA AGTGGTGAGG CGGTAGATCT TTGCGACTGC
CTGTTATATC CCGGTGATAT GCAAGCCTTG TTGCACCGTT TAACCCGCTT TGTGCAGCAG
GCGGGGCTTC CTCCCTATCG GGTTGATAAA GCCAAGGGCG AGCTTAAGTT TATTCTGCTG
ACACGCAGCC AAGTGCGCGG CGAATATCTG CTGCGTTTTG TGCTGCGATC ACACAATGGC
ATTGAACGTA TCGAACGCGA ATTACCAGCA TTATTGGCGG AATATCCGCA AATAAAAGTC
GTGTCAGTCA ATATTCAACC GATTCATATG GCGATACTTG AGGGCGATGA AGAGATTTTT
TTAACTGAGA ATACCCGTCT CGAAGAACGT TTTAATCATG TGCCTTTGTT CATTCGGCCT
AAGAGTTTTT TCCAGACCAA TCCGCAGGTT GCGGCTCAGT TATATCAAAC CGCCCGTGAT
TGGGTTGCCG AGTTTTCTCC TCGCTCGTTA TGGGATCTGT TTTGTGGCGT CGGCGGTTTC
GGACTGCACT GCGCATCCAA TGACATTACA CTCACAGGGA TTGAAATTGA AGCCGAGGCG
ATTGCCTGCG CGCAAATGTC AGCGCAAATG ATGGGGCTCG AAAACGTGCA ATTTATGGCG
CTCGATTCCA CCGACTTTGC CAAGGGCAAA AGTGCTGCCG ATAAGCCGGA TTTGATCATT
GTTAATCCGC CAAGGCGTGG CATTGGCGAG GCTTTATGCC AGTCATTAAG CGAGTTTGCG
CCTAAGGCGA TTCTCTATTC CAGCTGTAAT CCCAAAACCT TAGCGAAAGA TCTTGAGCAT
ATTCAAGGTT ATCACTTAAC CAAGGTGCAG CTATTTGATT TGTTTCCCCA TACGGATCAT
TTTGAAGTCT TAGCTATGTT GGTGAAGGAT TAA
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| Protein sequence | MSAAIVNAVK QCGYFNQGQC LSCRHIQQPL AQQVAVKTQT LQQLLAPFIP ANSAELFLPP
ITGDDSGFRN KAKMVVLGAA HEPVLGIVSP SGEAVDLCDC LLYPGDMQAL LHRLTRFVQQ
AGLPPYRVDK AKGELKFILL TRSQVRGEYL LRFVLRSHNG IERIERELPA LLAEYPQIKV
VSVNIQPIHM AILEGDEEIF LTENTRLEER FNHVPLFIRP KSFFQTNPQV AAQLYQTARD
WVAEFSPRSL WDLFCGVGGF GLHCASNDIT LTGIEIEAEA IACAQMSAQM MGLENVQFMA
LDSTDFAKGK SAADKPDLII VNPPRRGIGE ALCQSLSEFA PKAILYSSCN PKTLAKDLEH
IQGYHLTKVQ LFDLFPHTDH FEVLAMLVKD
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