Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_3387 |
Symbol | |
ID | 5370750 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 4021301 |
End bp | 4022248 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640831647 |
Product | 3'-5' exonuclease |
Protein accession | YP_001367577 |
Protein GI | 153001896 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.395277 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTAA TGAAATACTG TATCTCCCCG AGTAAGTTGG CTTGGTTACG CAAAGAATTG GGTAAAGATG CCAACGGCTT GATTGCGGCA ATGGATGCTG CGGGCACAGC TTATCTCGAT AAGCTCAATG CATCGACCGA GGCGTTAGAG GGAGAGCCGC TAGAAGGTGA GGCGGTCGAG ACTGACACGC CCACCAATGC TAAGACTCAG ACTCAGCGGC AAGCGCAGCG TCAGTTGGCG TATTTGTGGT TGCAGCAGCG GATTGCCTTA GCGACTCGTA TCGATGATGC TGACATGGCG GCATTAGCGG CCTTTGAATT TCAACAGATC CACATTGAAG TGGTTCAACC ATCGGAGTTT GATGCGGTTG TCGCGCGATT ACTGGCTGAG CCAGTCCTAG GTTTTGATAC TGAAACCCGT GCGAGTTTTG AGCGCGGCGT ACAACATCCC CTGAGCCTTA TCCAAATCGC GACAGCGGAC GCTTGTTATC TATTTCAACA TGCCATTTTA GGTGAGCAAT TCACCCAGTT AAAAACCGTA TTAGAAGATG AAAATATACT CAAAGTCGGC GTCGGTTTAC GCAGTGATGC GCAGGCTCTC AAGCGGCAAT GGGGCATCAA TGTCGCTTCA AAGTTAGATT TAAATTGGGC ACTGGCGCAA CTTGGGGCGG AGAAAGAAAT GGGGACGCGC CAATTGGTGG CGACTCTGCT GGGCACCCGT ATCGATAAAC CGAAAAAAAT CACCCTATCG AATTGGCAGC ATGTGCCATT ATCTAGCGCG CAAATCGATT ATGCCGCCGC CGATGCCTTG GCTGCGCTCA TGTGTTTCAA TGCGTTAATC ACTCAGCTGA CGCCTTTTTA TCATGCATCG AGTGCTACAA AAGCCGCGCC GTTAATCCCT TCGAGTCTAG CGGCGCCATT GGCGAAATAT TTTAAGGATG TTGAATGA
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Protein sequence | MKLMKYCISP SKLAWLRKEL GKDANGLIAA MDAAGTAYLD KLNASTEALE GEPLEGEAVE TDTPTNAKTQ TQRQAQRQLA YLWLQQRIAL ATRIDDADMA ALAAFEFQQI HIEVVQPSEF DAVVARLLAE PVLGFDTETR ASFERGVQHP LSLIQIATAD ACYLFQHAIL GEQFTQLKTV LEDENILKVG VGLRSDAQAL KRQWGINVAS KLDLNWALAQ LGAEKEMGTR QLVATLLGTR IDKPKKITLS NWQHVPLSSA QIDYAAADAL AALMCFNALI TQLTPFYHAS SATKAAPLIP SSLAAPLAKY FKDVE
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