Gene Shew185_3387 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_3387 
Symbol 
ID5370750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp4021301 
End bp4022248 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content50% 
IMG OID640831647 
Product3'-5' exonuclease 
Protein accessionYP_001367577 
Protein GI153001896 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.395277 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTTAA TGAAATACTG TATCTCCCCG AGTAAGTTGG CTTGGTTACG CAAAGAATTG 
GGTAAAGATG CCAACGGCTT GATTGCGGCA ATGGATGCTG CGGGCACAGC TTATCTCGAT
AAGCTCAATG CATCGACCGA GGCGTTAGAG GGAGAGCCGC TAGAAGGTGA GGCGGTCGAG
ACTGACACGC CCACCAATGC TAAGACTCAG ACTCAGCGGC AAGCGCAGCG TCAGTTGGCG
TATTTGTGGT TGCAGCAGCG GATTGCCTTA GCGACTCGTA TCGATGATGC TGACATGGCG
GCATTAGCGG CCTTTGAATT TCAACAGATC CACATTGAAG TGGTTCAACC ATCGGAGTTT
GATGCGGTTG TCGCGCGATT ACTGGCTGAG CCAGTCCTAG GTTTTGATAC TGAAACCCGT
GCGAGTTTTG AGCGCGGCGT ACAACATCCC CTGAGCCTTA TCCAAATCGC GACAGCGGAC
GCTTGTTATC TATTTCAACA TGCCATTTTA GGTGAGCAAT TCACCCAGTT AAAAACCGTA
TTAGAAGATG AAAATATACT CAAAGTCGGC GTCGGTTTAC GCAGTGATGC GCAGGCTCTC
AAGCGGCAAT GGGGCATCAA TGTCGCTTCA AAGTTAGATT TAAATTGGGC ACTGGCGCAA
CTTGGGGCGG AGAAAGAAAT GGGGACGCGC CAATTGGTGG CGACTCTGCT GGGCACCCGT
ATCGATAAAC CGAAAAAAAT CACCCTATCG AATTGGCAGC ATGTGCCATT ATCTAGCGCG
CAAATCGATT ATGCCGCCGC CGATGCCTTG GCTGCGCTCA TGTGTTTCAA TGCGTTAATC
ACTCAGCTGA CGCCTTTTTA TCATGCATCG AGTGCTACAA AAGCCGCGCC GTTAATCCCT
TCGAGTCTAG CGGCGCCATT GGCGAAATAT TTTAAGGATG TTGAATGA
 
Protein sequence
MKLMKYCISP SKLAWLRKEL GKDANGLIAA MDAAGTAYLD KLNASTEALE GEPLEGEAVE 
TDTPTNAKTQ TQRQAQRQLA YLWLQQRIAL ATRIDDADMA ALAAFEFQQI HIEVVQPSEF
DAVVARLLAE PVLGFDTETR ASFERGVQHP LSLIQIATAD ACYLFQHAIL GEQFTQLKTV
LEDENILKVG VGLRSDAQAL KRQWGINVAS KLDLNWALAQ LGAEKEMGTR QLVATLLGTR
IDKPKKITLS NWQHVPLSSA QIDYAAADAL AALMCFNALI TQLTPFYHAS SATKAAPLIP
SSLAAPLAKY FKDVE