| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3384 |
|---|
| Symbol | |
|---|
| ID | 5369400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 4018136 |
|---|
| End bp | 4019152 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640831643 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001367574 |
|---|
| Protein GI | 153001893 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000032973 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAAC GTAAACCTGA GGATGCTTGG TTACCACCTT CAGTCTACAT TCATCGCCGT
GCTGGAAAGC CAATTTGTTA TGTGATTAAG CGTCCTAACT CGACTAAGGT GCTGTGCAAA
ATCACGGCGA GTAAAGCCGA GGTATGGACT GCATACGAAA AGGCAGTTGC TGAGTTTAGC
CTTGAGTACA CGGTTAACCG TTTAGCGATG GAGTATTTGG ATAGTGCAAA CTTTAAAGAG
CTTGCCCCCA GAACCCAGCG AGATCGGGAC CGTGAACTTA ATGTGTTCAG TAAAGTGTTT
GGCAGTATGT TACCGGACCG AATTGAGCCA CATCATATTA GGCGCTATAT GGATCTAAGG
GGGCAATCAA GTAAGACCCA AGCAAACCAT GAACTCGCGG CAGCTAGCGT GATGTTTGCT
TGGGGTTATG AGCGTGGACG CTGTAAAAGC AACCCCGCAA AAGGGGTTAA AAAGTTTAAG
GTAAAGGCTC GCGATAGATA TATTACTGAT GCGGAGTTCA ACGCTCTGCT TTCATGTGCA
GAGATAAGGT TAAAAATTGC CTGTGAAATA AGTTACCTAT GTGCAGCAAG GCAAGGTGAT
GTTTTGCAAT TAACTTGGTC GCAGGTTAAT GAAGATGGCT TGTTTATCCA ACAGGGTAAA
ACAGGGAAAA AGCAAATCAA AGCTTGGTCG CCTCGACTGC GAAAAGCGAT TGCCGAAGCA
AGAACTCTGC ATTCAGGCAT TGCCAGTATT TATGTCATTA ATAAACATCC CAGCGGGAAA
TTAACACAAG ATGGATTGCG CAGTGCTTGG AAGCGAGCGA TGGCAAAAAT GGAAATGGAT
TATCCGCAGA TTGAACGCAC TTTCACGTTC CATGATATTA AGGCTAAAGG TGTATCAGAC
TTTGAGGGAA CACTGTCAGA GAAGCAACAA TACTCGGGCC ATAAAACCTT GGCACAAGTG
AACACCTACG ACAGGAAAGT GGAAATAGTA CCGACAATTG GTAGCGTTAA AAAATGA
|
|---|
| Protein sequence | MRKRKPEDAW LPPSVYIHRR AGKPICYVIK RPNSTKVLCK ITASKAEVWT AYEKAVAEFS
LEYTVNRLAM EYLDSANFKE LAPRTQRDRD RELNVFSKVF GSMLPDRIEP HHIRRYMDLR
GQSSKTQANH ELAAASVMFA WGYERGRCKS NPAKGVKKFK VKARDRYITD AEFNALLSCA
EIRLKIACEI SYLCAARQGD VLQLTWSQVN EDGLFIQQGK TGKKQIKAWS PRLRKAIAEA
RTLHSGIASI YVINKHPSGK LTQDGLRSAW KRAMAKMEMD YPQIERTFTF HDIKAKGVSD
FEGTLSEKQQ YSGHKTLAQV NTYDRKVEIV PTIGSVKK
|
|---|
| |