| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3291 |
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| Symbol | secF |
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| ID | 5371818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 3921936 |
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| End bp | 3922838 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640831543 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001367481 |
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| Protein GI | 153001800 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000487851 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATA TTAATCTAAC AAAATGGCGT TATGTCTCCA GTGCTATCTC AATTTTATTG
ATGATAACGT CATTAGCCAT CATAGGTGTA AAGGGTTTTA ACTGGGGATT AGACTTTACC
GGTGGTGTGG TGACTGAGGT TCAGCTCGAT AGAAAAATCA CCAGCAGTGA GTTACAACCT
TTGCTTAACG CTGCCTATCA GCAGGAAGTC TCTGTGATCT CGGCCAGTGA GCCGGGCCGT
TGGGTATTAC GCTATGGTGA TATAAAGAGT GCTGATACTG AGCAAAGCAA TGTCGATATT
CAGCAGGCAT TAGCGCCACT TAACTCTGAA GTGCAAGTCC TTAACAGCAG CGTTGTTGGG
CCGCAGATTG GTCAAGAACT GGCGGAGCAG GGTGGGTTAG CGCTGTTAGT CGCTATGCTA
TGTATTTTAG GCTATTTAAG TTATCGCTTC GAGTGGCGAC TCGCATCGGG TGCTTTGTTT
GCGCTAGTGC ACGACGTTGT GTTTGTGCTG GCGTTTTTTG CGCTGACGCA GATGGAGTTT
AATTTAACGG TACTGGCGGC TGTGCTGGCG ATTTTAGGCT ATTCGTTAAA TGACTCGATC
ATCATTGCCG ACCGTATCCG TGAATTATTG ATTGCTAAGC CAAAGCTTGC GATTCAAGAA
ATTAATAACC AAGCGATTGT GGCGACATTC TCCCGTACTA TGGTGACGTC AGGGACAACC
TTAATGACGG TCGGTGCGCT GTGGATCATG GGCGGCGGAC CGCTGGAAGG ATTCTCGATT
GCGATGTTTA TCGGTATTTT AACTGGGACA TTCTCATCGA TTTCTGTTGG CACCTCATTG
CCTGAGTTAT TAGGTTTAAC GCCTGAGCAT TATAAGGAAC AAGTGATTTC TGATACGCCT
TAG
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| Protein sequence | MKNINLTKWR YVSSAISILL MITSLAIIGV KGFNWGLDFT GGVVTEVQLD RKITSSELQP
LLNAAYQQEV SVISASEPGR WVLRYGDIKS ADTEQSNVDI QQALAPLNSE VQVLNSSVVG
PQIGQELAEQ GGLALLVAML CILGYLSYRF EWRLASGALF ALVHDVVFVL AFFALTQMEF
NLTVLAAVLA ILGYSLNDSI IIADRIRELL IAKPKLAIQE INNQAIVATF SRTMVTSGTT
LMTVGALWIM GGGPLEGFSI AMFIGILTGT FSSISVGTSL PELLGLTPEH YKEQVISDTP
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