Gene Shew185_3231 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_3231 
Symbol 
ID5373409 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp3855398 
End bp3856255 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content43% 
IMG OID640831481 
Productnucleoside-specific channel-forming protein Tsx 
Protein accessionYP_001367421 
Protein GI153001740 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3248] Nucleoside-binding outer membrane protein 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.039e-11 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAACG TTAAAACTTT AGCTTTAGCC GCTACTGCTG TAGCTGCAAT CTCTGGCAAC 
GCATTTGCCG CTGATCGTAC AGATCTTCAC GGTACTGATT ACAAGTGGAT GCAGTTCAAC
GCTATGTACT CTATCGGTGA AAAACCAGAG AGCCCAGCGG CTGGCGATCA ACATAACTAC
TTAGAAATGG AATTCGGCGG TCGTTCTGGC GTATTCGATC TATACGGTTA TGTTGACGTA
TTCAACTTGG CAAACGAAAC ATCAAGCAAT GGTGACAAGA ATCCAGGTAC AGGTAAAAGT
AAGCTGTTTA TGAAGTTTGC TCCACGTGTA TCTATCGATG CGCTTACTGG TAAAGACTTG
TCTTTTGGAC CAATTCAAGA AGTTTACTTC TCTACTCTGT TCAACTGGGA TGGTAATGTA
GGCGAAGGCG TTAACTCTAC TTTTTGGGGT GTTGGTGCTG ACGTAAACGT GCCTTGGTTA
GGCAAAACAG GCATGAACCT GTACGGTTAC TATGACATGA ACGCTAAAGA GTGGAATGGC
TACCAGTTCT CTGCTAACTG GTTCAAGCCT TTCTACTTCT TCGATAACAA GAGCTTCCTG
TCATTCCAAG GTTACATCGA TTATCAATTT GGTGCTGACG AAGCATATTG GCCTGTTGTT
GAGAATGGTC CTCTAGTTAA GGGTAAATCA ACAAACGGCG GTAACGTATT CTTCGGTCTA
TACTGGCATT CAGATCGTTA TGCTCTGGGT TATGGCTTGA AAGGCTTCAA AGATGTTTAC
TTACTAACTG ATGATGGTGC TACTGGCCTA GAATCAACAG GTTGGTCACA CTACCTGTCA
GCAACTTACA AGTTCTAA
 
Protein sequence
MKNVKTLALA ATAVAAISGN AFAADRTDLH GTDYKWMQFN AMYSIGEKPE SPAAGDQHNY 
LEMEFGGRSG VFDLYGYVDV FNLANETSSN GDKNPGTGKS KLFMKFAPRV SIDALTGKDL
SFGPIQEVYF STLFNWDGNV GEGVNSTFWG VGADVNVPWL GKTGMNLYGY YDMNAKEWNG
YQFSANWFKP FYFFDNKSFL SFQGYIDYQF GADEAYWPVV ENGPLVKGKS TNGGNVFFGL
YWHSDRYALG YGLKGFKDVY LLTDDGATGL ESTGWSHYLS ATYKF