| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3180 |
|---|
| Symbol | |
|---|
| ID | 5369811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 3793290 |
|---|
| End bp | 3796448 |
|---|
| Gene Length | 3159 bp |
|---|
| Protein Length | 1052 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640831433 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_001367373 |
|---|
| Protein GI | 153001692 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTATCGC AGTTTTTTAT TAAAAGACCG ATATTTGCAG CCGTACTCTC ACTGCTGTTT
TTTATCACAG GGGCGATTGC CGTTTGGCAA CTGCCGATCA CTGAATACCC TGAAGTTGTG
CCGCCCACCG TCGTGGTGAC CGCTAACTAC CCTGGCGCTA ACCCTAAAGT GATTGCCGAA
ACCGTGGCTT CACCGCTGGA GCAGGAAATC AACGGCGTCG AAGACATGTT GTACATGTCA
TCGCAAGCGA CGTCCGATGG ACGCATGACC TTGACCATCA CCTTTGCCAT TGGCACTGAT
GTGGACAGGG CGCAAACCCA AGTGCAGAGC CGAGTCGATC GCGCTATGCC GCGTCTGCCA
CAGGAAGTGC AACGCTTAGG CATAGTCACC GAAAAGTCAT CGCCGGATCT CACCATGGTG
GTGCATTTGC TGTCACCGGA TAACCGTTAT GACATGTTGT ATTTGTCTAA CTATGCGGCG
CTGAACGTTA AAGATGAGCT CGCACGGATT AAAGGTGTGG GCGCGGTACG CTTGTTTGGC
GCTGGGGAAT ACAGCCTGCG TATTTGGCTC GACCCGAATA AAGTCTCGGC TCTGGGTTTA
TCACCTGCGG ACATTATTGC TGCCGTGCGT GAGCAAAACC AACAGGCGGC AGCGGGCAGT
TTAGGTGCTC AACCCAGTGG TAGTGCTGAC TTCCAACTCT TAATTAACGT AAAAGGTCGT
TTAACTGAAC TGTCTGAATT TGAAGATATC ATCATCAAAG TCGGTCAAAA CGGTGAAGTG
AATCGTTTGA AGGATGTGGC TCGTATCGAG CTGGGTGCGA CAAGCTATGC GCTGCGCTCA
CTGCTGGATA ACAAAGATGC AGTGGCGATT CCAGTGTTCC AAGCATCGGG TTCAAATGCG
ATTCAGATTT CCGATGATGT GCGCGCCAAA ATGGCTGAAT TGTCTAAAGG ATTCCCCGAA
GGATTAACGT ACGAAATCGT TTACGACCCA ACCGTGTTCG TGCGCGGCTC GATTGAGGCG
GTGATGAAAA CCTTGCTTGA AGCCGTGTTG CTGGTGGTGT TAGTGGTAGT GCTGTTCTTG
CAAACCTGGC GCGCCTCGAT TATTCCGCTG GTGGCTGTGC CTGTATCGTT AGTTGGTACC
TTTGCCTTTA TGCATTTGCT CGGCTTCTCG CTTAACGCAC TGTCGCTGTT TGGACTCGTG
CTCGCCATCG GGATTGTGGT GGATGATGCA ATTGTGGTGG TCGAAAACGT CGAGCGTAAT
ATTGCCGCTG GTTTAAGCCC TGTTGCGGCA ACGCAAAAGG CGATGAAAGA AGTGACTGGC
CCTATTGTGG CAACCACCTT AGTGCTGGCG GCGGTGTTTA TTCCTACGGC GTTTATGAGT
GGTTTAACCG GGCAGTTTTA TAAACAGTTT GCCTTGACTA TCACTATTTC GACCTTTATC
TCGGCGATTA ACTCACTCAC TTTGAGTCCA GCATTGTCCG CGTTATTGCT CAAGAGCCAT
GATGCGCCGA AGGATGGTTT AACCCGTCTA ATGGACAAGT TGCTCGGTGG TTGGTTGTTC
ACGCCTTTTA ACCGCTTATT TAGCCGTGCA TCCGATGGCT ATGGTTGGTT AGTGCGTAAA
GTGATCCGTT TTGGCGGCAT TATCGGCCTA GTGTATTTAG GCATGGTAGC GCTAACGGGC
GTGCAATTTG CTCATACACC AACGGGTTAT GTACCGGGTC AAGATAAACA GTATTTAGTG
GCGTTTGCTC AGTTGCCCGA TGCGGCATCC CTTGAACGTA CCGATACCGT TATCAAAAAG
ATGTCTGAGA TTGCCCTTAA TCACCCAGGT GTGGCGCACT CGATTGCCTT CCCAGGCCTT
AGCATCAACG GTTTTACTAA TAGTCCTAAT TCAGGCGTTG TGTTTGTCGC GCTTGATGAT
TTTGAATTGC GTAAGAGTCC TGAGCTGTCG GCGAATGCCA TTGCTGGACA ATTGAATAAA
GAGTTTGCTG GAATTCAAGA CGCATTTATT GCCATCTTCC CGCCGCCACC TGTGCAAGGC
CTCGGCACTA TAGGAGGGTT CCGTCTGCAA ATTCAAGACA GAGCCAACCT TGGTTATGAG
GCCTTGTATC AGGTGACCCA ACAAGTGATG TACAAGGCGT GGGCCGATCC TCAATTAGCC
GGAATTTTCT CTAGCTATCA GGTGAACGTG CCACAACTTG AACTGGATAT TGATCGAACT
AAAGCGAAAC AGCAGGCAGT GTCGCTCGAT CAAATCTTCC AGACATTACA AACCTATATG
GGCTCGACCT ATGTCAACGA TTTCAATCGT TTCGGTCGAA CCTATCAGGT GAATATGCAA
GCCGATGAGG CGTTCCGTCA AAGCCCGCAG CAGATAAGTC AGCTGAAGGT GCCAAATCTG
AATGGTGATA TGATCCCGTT AGGGTCGTTT ATCAACGTCA GCCAAAGCTC AGGCCCAGAC
AGAGTGATGC ACTATAACGG CTTTACGACC GCTGAAATCA ACGGTGGCCC AGCAGCAGGT
GTGAGTACTG GCCAAGCGCA GGCAGCGATT GAGAAAATCC TCGCCGAAAC GCTGCCAAAT
GGTATGACCT ACGAATGGAC TGAGTTAACT TATCAGCAAA TCTTAGCAGG CAATACGGGC
TTGTTAGTCT TCCCGCTGGT GATCTTGCTG GTGTTCATGG TGCTCGCTGC TCAGTATGAG
AGCTTAAGCT TGCCATTGGC GATTATCTTA ATCATTCCAA TGACCTTGCT CTCAGCCCTC
AGTGGAGTGT TAATTTACGG TGGTGACAAC AATATCTTCA CCCAAATTGG CCTGATAGTG
CTGGTAGGAC TTGCGACTAA GAACGCTATC TTGATTGTCG AGTTCGCCAA GGAGAAACAA
GATCACGGTA TGGCACCTAT GGATGCGATA TTAGAGGCAG CAAGATTACG TTTACGTCCT
ATCTTGATGA CATCTATCGC CTTTATTATG GGAGTAGTGC CTATGGTATT CTCCACTGGC
GCTGGCGCCG AGATGCGTCA AGCCATGGGC GTAGCAGTAT TCGCCGGCAT GATTGGGGTG
ACTGTGTTTG GTCTAATCCT AACGCCATTG TTCTACTACG CACTGGCAAA GCGAGGCAGT
AAAAAAGTCG AAGAGCATAA AGAACTAACC GTCAGTTAA
|
|---|
| Protein sequence | MLSQFFIKRP IFAAVLSLLF FITGAIAVWQ LPITEYPEVV PPTVVVTANY PGANPKVIAE
TVASPLEQEI NGVEDMLYMS SQATSDGRMT LTITFAIGTD VDRAQTQVQS RVDRAMPRLP
QEVQRLGIVT EKSSPDLTMV VHLLSPDNRY DMLYLSNYAA LNVKDELARI KGVGAVRLFG
AGEYSLRIWL DPNKVSALGL SPADIIAAVR EQNQQAAAGS LGAQPSGSAD FQLLINVKGR
LTELSEFEDI IIKVGQNGEV NRLKDVARIE LGATSYALRS LLDNKDAVAI PVFQASGSNA
IQISDDVRAK MAELSKGFPE GLTYEIVYDP TVFVRGSIEA VMKTLLEAVL LVVLVVVLFL
QTWRASIIPL VAVPVSLVGT FAFMHLLGFS LNALSLFGLV LAIGIVVDDA IVVVENVERN
IAAGLSPVAA TQKAMKEVTG PIVATTLVLA AVFIPTAFMS GLTGQFYKQF ALTITISTFI
SAINSLTLSP ALSALLLKSH DAPKDGLTRL MDKLLGGWLF TPFNRLFSRA SDGYGWLVRK
VIRFGGIIGL VYLGMVALTG VQFAHTPTGY VPGQDKQYLV AFAQLPDAAS LERTDTVIKK
MSEIALNHPG VAHSIAFPGL SINGFTNSPN SGVVFVALDD FELRKSPELS ANAIAGQLNK
EFAGIQDAFI AIFPPPPVQG LGTIGGFRLQ IQDRANLGYE ALYQVTQQVM YKAWADPQLA
GIFSSYQVNV PQLELDIDRT KAKQQAVSLD QIFQTLQTYM GSTYVNDFNR FGRTYQVNMQ
ADEAFRQSPQ QISQLKVPNL NGDMIPLGSF INVSQSSGPD RVMHYNGFTT AEINGGPAAG
VSTGQAQAAI EKILAETLPN GMTYEWTELT YQQILAGNTG LLVFPLVILL VFMVLAAQYE
SLSLPLAIIL IIPMTLLSAL SGVLIYGGDN NIFTQIGLIV LVGLATKNAI LIVEFAKEKQ
DHGMAPMDAI LEAARLRLRP ILMTSIAFIM GVVPMVFSTG AGAEMRQAMG VAVFAGMIGV
TVFGLILTPL FYYALAKRGS KKVEEHKELT VS
|
|---|
| |