| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3100 |
|---|
| Symbol | |
|---|
| ID | 5370435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 3695909 |
|---|
| End bp | 3696811 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640831346 |
|---|
| Product | homocysteine S-methyltransferase |
|---|
| Protein accession | YP_001367294 |
|---|
| Protein GI | 153001613 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2040] Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGC AGCAACTGTG GGTTTTGGAT GGTGGCATGG GGCGTGAGTT GGCAAGACGG
GGCGCACCCT TTCGACAGCC TGAGTGGTCG GCGTTGGCCC TGATAGAAGC GCCACAAACC
GTGACTGAGG TACATCAAGC CTACGTAGCC AGTGGGGCCA AAGTCATCAC CACCAACAGT
TATGCACTCG TGCCATTTCA TATCGGCGAC GAGCGTTTTG CCGCCGAGGG TGAAGCGCTG
GCTGCATTGG CGGGCAAATT GGCACGGGAT GTCGCGGATG AACACGCAAA TGCGGTTCGC
GTCGCGGGCT CATTGCCACC CTTGTTCGGC TCTTACCGTG CCGATTTATT TGAGGCCGCG
AGGGTGAGTG AACTGGCGCT TCCACTCATT CGAGCGCTGT CGCCCAGTGT CGATCTCTGG
TTAGCCGAAA CCATGAGTTT GATTGCTGAG CCTTTAGCCA TCAAGGCCTT GCTGCCAGAA
GATGGCAAAC CATTTTGGGT TTCTTTTACC TTAGAGGACG AGACGTTAGG CAGTGAACCG
ACACTTCGCT CCGGTGAGCG GGTGGCAGAT GCTATCGACG CGTTAGTGGC TGTCGGTGTC
GATGCGATTC TGTTCAACTG CTGTCAGCCT GAGGTGATTG AGGCGGCATT ACAGGTGGCC
AGCGACAGAT TGAGTGCTCT GGGGCGTGCC GATATTCGAC TCGGTGCCTA TGCCAATGCG
TTTCCTCCTC AGCCGAAAGA GGCGACGGCT AACGATGGTC TGGATGAGAT CCGTGCCGAT
CTTGGACCGC TCGATTATCT CGGTTGGGCT GAGCGTTGGC GCGCGGTTGG GGCTTCGCTT
ATCGGTGGTT GCTGTGGCAT TGGTCCCGAA CACATTCAGG CTCTTTCTAC TCGTTTGCGC
TAA
|
|---|
| Protein sequence | MDKQQLWVLD GGMGRELARR GAPFRQPEWS ALALIEAPQT VTEVHQAYVA SGAKVITTNS
YALVPFHIGD ERFAAEGEAL AALAGKLARD VADEHANAVR VAGSLPPLFG SYRADLFEAA
RVSELALPLI RALSPSVDLW LAETMSLIAE PLAIKALLPE DGKPFWVSFT LEDETLGSEP
TLRSGERVAD AIDALVAVGV DAILFNCCQP EVIEAALQVA SDRLSALGRA DIRLGAYANA
FPPQPKEATA NDGLDEIRAD LGPLDYLGWA ERWRAVGASL IGGCCGIGPE HIQALSTRLR
|
|---|
| |