| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_3046 |
|---|
| Symbol | |
|---|
| ID | 5371736 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 3637932 |
|---|
| End bp | 3639098 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640831288 |
|---|
| Product | putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_001367240 |
|---|
| Protein GI | 153001559 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000324324 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCAA CTGCCGTGAC TACTGCGATG AAGCTCGAAC TGCCGCCACT CAGTCTGTAT
ATCCATATTC CTTGGTGCGT ACAAAAGTGT CCTTATTGTG ACTTTAATTC CCATGGCCAA
AATGGTGAGC TGCCACAAGA AGCCTATGTT GATGCGCTAT TGGAAGACTT ACGCCAAGAC
TTACATCTCG TCCAAGGGCG GCAAATTCAT ACCATCTTTA TCGGTGGCGG CACACCATCC
TTATTCGATG CTTTGCAAAT CAAACGCATA CTCGATGGTG CCAATGCGCT AATCCCCTTT
AGTGACAATA TCGAAATCAC CATGGAAGCC AACCCTGGCA CCTTAGAACA CGATGACTTT
AGTGCCTATC GCGCAGCCGG TATCACTCGT TTATCTATCG GTGTGCAGAG TTTTTCTAAG
GATAAGCTCA ACTTACTTGG ACGTATTCAC GATCAAAATG AGGCACAAGT CGCCGCTCAA
AAAGCCAGCC AAGCGGGATA CTTGAGTTTT AACCTCGATT TAATGCATGG ATTACCCAAC
CAAAGTTTTG CTGAAGCCAT GGCTGATATC GACACGGCAG CGGCGCTGAA TCCACCCCAC
CTGTCTTGGT ACCAGTTAAC AATTGAGCCC AACACCCTAT TCCACTCAAA ACCACCGCAA
CTGCCCGATG ACGAAGCGCT CTGGCATATC TATGAGCAAG GTCAACAAAA GCTGGCTGCA
TTAGGGTATG AGCAATACGA AATATCCGCC TATGCGAAAC CTGGTTACCA ATGTAGGCAC
AATCTCAACT ACTGGCAGTT TGGTGATTAT CTAGGTATAG GCTGTGGCGC CCACGGTAAA
GTGACGCTGC CAGAAGAAAA CCGCATTATA CGCACGGTAA AAATTAAACA TCCCAAGGGA
TATCTGAGTG CCAGCAACTA CACCTTCGAA TCGATTGAAG TGGCAGAGGA AGATCGCGCG
CTTGAATATT TAATGAATCG CCTGCGCCTG ATGACACCTA TCCCTAAGCA AGAATTTGAA
CTGCGTACCG GACAGCACAG AGACACATTG ACCGAAGGAA TGGAAAAAGC CAAACAACGC
GGTTTACTCA CAGAATCCGC TGAACATTGG CAATTAACCA GCAAAGGTCA CATGTTTGTT
AATGATTTAC TGACACAATT CTGCTAA
|
|---|
| Protein sequence | MSSTAVTTAM KLELPPLSLY IHIPWCVQKC PYCDFNSHGQ NGELPQEAYV DALLEDLRQD
LHLVQGRQIH TIFIGGGTPS LFDALQIKRI LDGANALIPF SDNIEITMEA NPGTLEHDDF
SAYRAAGITR LSIGVQSFSK DKLNLLGRIH DQNEAQVAAQ KASQAGYLSF NLDLMHGLPN
QSFAEAMADI DTAAALNPPH LSWYQLTIEP NTLFHSKPPQ LPDDEALWHI YEQGQQKLAA
LGYEQYEISA YAKPGYQCRH NLNYWQFGDY LGIGCGAHGK VTLPEENRII RTVKIKHPKG
YLSASNYTFE SIEVAEEDRA LEYLMNRLRL MTPIPKQEFE LRTGQHRDTL TEGMEKAKQR
GLLTESAEHW QLTSKGHMFV NDLLTQFC
|
|---|
| |