Gene Shew185_2919 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_2919 
SymbolfliA 
ID5373013 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp3502008 
End bp3502721 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content44% 
IMG OID640831163 
Productflagellar biosynthesis sigma factor 
Protein accessionYP_001367116 
Protein GI153001435 
COG category[K] Transcription 
COG ID[COG1191] DNA-directed RNA polymerase specialized sigma subunit 
TIGRFAM ID[TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.429378 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATAAAG CCGCTGCGTA TACTTGTTTA GACAATAAAT CGTCGATCGT TGAACAGTAT 
GCTCCGTTGG TTAAAAGAAT TGCGCATCAT TTACTCGCCA GACTACCTGC CTCCGTGCAG
TTAGATGATT TACTCCAAGC TGGGATGATG GGGTTATTAG AAGCATCATC CAAGTTTGAT
GGTGGCAAGG GTGCGAAATT TGAAACCTTC GCCGGCATAC GCATACGTGG GGCCATGTTA
GATGAAATTC GCCGCGGCGA TTGGGTCCCT CGTTCCGTTC ATCGTAACAA CCGCAAGGTT
GCACACGCTA TAGATGAGTT AGAGCAAGCG CTGGGTCGTG ATGCACGCGA CACAGAAATT
GCAGAAAAAC TTGATATGAC GCTCGATGAG TACCATCATA TTCTTAACGA TGTTTCTGTC
GGAAAAATCA TAGGGATAGA AGACTTAGGC GTATCTCAGG ATATACTTAC AGTGAGTGAT
CGGTCCGATG ATGATTCATT TGAAGCATTA GCTGAGAACC AATTTCATTC TGCTCTGGTT
GAGGCAATTA AATTATTGCC TGAAAGAGAT GCATTAGTGT TATCCCTGTA CTACGATGAA
GCATTGAATT TAAAAGAGAT TGGCGCCATT CTTGAAGTCA GTGAATCGCG GGTTAGCCAG
ATATTAAGTC AGGCAATGTT GCGATTGAAA GCTAAACTCA AGCACTGGAC ATAA
 
Protein sequence
MNKAAAYTCL DNKSSIVEQY APLVKRIAHH LLARLPASVQ LDDLLQAGMM GLLEASSKFD 
GGKGAKFETF AGIRIRGAML DEIRRGDWVP RSVHRNNRKV AHAIDELEQA LGRDARDTEI
AEKLDMTLDE YHHILNDVSV GKIIGIEDLG VSQDILTVSD RSDDDSFEAL AENQFHSALV
EAIKLLPERD ALVLSLYYDE ALNLKEIGAI LEVSESRVSQ ILSQAMLRLK AKLKHWT