| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2597 |
|---|
| Symbol | mdoD |
|---|
| ID | 5373690 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 3095947 |
|---|
| End bp | 3097536 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640830809 |
|---|
| Product | glucan biosynthesis protein D |
|---|
| Protein accession | YP_001366795 |
|---|
| Protein GI | 153001114 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000617652 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCATA CGATGAATTA CCCTACCGGT TATCCGGCAT TACTCAAAAA ACTACCTTTT
TTCATCTTGA CCGCCATCGT CTACGTCGTC GGCATGAATA ACGTCAATGC CGCAGCCGCA
GAGACAACCG CAGCATCCGC GCCTGTACCA GAAAAAAAAT CTAAAAATTT TACCCACGAT
ACTGTGGTCG AACTCGCGCA ACAACTGTCG CAAAAACCAT TTAAAGAAGC CAAGAAAGCG
CCTCAAGAAC TGATCGATCT TGATTTTGTC ACCTATGGCA AAATCAATTA TCAAGAAAAT
GCCGCGATTT GGGGCGGTAC ACCCACTAAA TTTTCGGTAC AGCTTTTTGC TCCGGGTTTT
CTCTATAAAA ACCTCGTCGA CATCGACGTG GTCGAAAACA GCAAAGCGAT ACCGATTGAA
CTCACTGAGG CCTCGTTCGA TGTACCCAGT GACGCCATCG AAAAACTCAT CACCCAATTG
GGTCAATATG CTGGCGTGCG TTTGCATTAC CCCATCAATG ACGATGAAGT AAAAGATGAA
TTCATCATGT TTCAAGGCGC AAGCTATTTT CGCGTTCTGT CTAAAGGGCA AACCTATGGC
CTGTCGAATC GCGGTTTAGC GATAGATGTC GCCCAGCCTA AAGGCGAAGA ATATCCATTG
TTTAAGCGTT TTTGGGTTGA ACGACCATCC AAATACCAAA CGGCGATTGT GGTGCATGCC
CTGCTCGACA GCCAAAGTGT CACGGGGGCC TATCGTTTTG GTATATACCC TGGCGCACCA
TCACGTGTCG AAGTGGATGT AACCCTGTTC CCACGCAAAG ATATTCAACA TGTTGGCCTT
GCACCGCTGA CCTCTATGTT CCTATTTGGT GGATTAGATA ACTCGGATAA ACCCGATTAC
CGCCCAGAAG TACACAACTC AGACGGTCTG CAAATCGATC GCGGCAATGG CGAACGTCTA
TGGCGCCCCC TAAATAATCC CAACAAACTG CAAGTCAGCG CCTTTGCCGA TGAAGATATT
AAAGGTTTTG GTCTGATCCA GCGCCACCGT AAATTCGAAG ACTATCAAGA TCTGAGTGCA
AACTATCAAC TTCGTCCTTC CGCGTGGATT GAGCCACTCA ATGATTGGGG CAAGGGCCAG
CTGGTGTTGA TTGAAATCCC ATCGAGTGCT GAAACCAACG ACAACATAGT CGCTTATTGG
GAGCCTCAAG GCGGCCTGAA GAAAGATCAA CCCTATAAAT ATTCCTATCG TATGACGGCG
TCAAACGACA GCCCTTCAAT CGCGTCAAAG GCACGAGTGG TCCGCAGTTC GAAGGGGCAA
GTGCTCAGCA AGGGTAAAGA GTTACTCGTC GACTTCAGTA ATATCAAGTC ACAAGATATT
GATAAGATTA GTATCGATGC CAGCATCAAC AAAGGCAAAA TCCTGTCTAC TCGGATTGTT
GCCCACCCTG ATATCAATGG TGCACGGGTA TTTGTCAGCT TCGAACCAGA AAGTACCAAT
GTAGCCGAGC TGAGATTACA GTTGAAGAAA GACGACAAAC CCCTCGCAGC GACTTGGTTA
TACCGCTGGA ATAGCGACGA TTGGCAATAG
|
|---|
| Protein sequence | MNHTMNYPTG YPALLKKLPF FILTAIVYVV GMNNVNAAAA ETTAASAPVP EKKSKNFTHD
TVVELAQQLS QKPFKEAKKA PQELIDLDFV TYGKINYQEN AAIWGGTPTK FSVQLFAPGF
LYKNLVDIDV VENSKAIPIE LTEASFDVPS DAIEKLITQL GQYAGVRLHY PINDDEVKDE
FIMFQGASYF RVLSKGQTYG LSNRGLAIDV AQPKGEEYPL FKRFWVERPS KYQTAIVVHA
LLDSQSVTGA YRFGIYPGAP SRVEVDVTLF PRKDIQHVGL APLTSMFLFG GLDNSDKPDY
RPEVHNSDGL QIDRGNGERL WRPLNNPNKL QVSAFADEDI KGFGLIQRHR KFEDYQDLSA
NYQLRPSAWI EPLNDWGKGQ LVLIEIPSSA ETNDNIVAYW EPQGGLKKDQ PYKYSYRMTA
SNDSPSIASK ARVVRSSKGQ VLSKGKELLV DFSNIKSQDI DKISIDASIN KGKILSTRIV
AHPDINGARV FVSFEPESTN VAELRLQLKK DDKPLAATWL YRWNSDDWQ
|
|---|
| |