Gene Shew185_2588 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_2588 
Symbol 
ID5372900 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp3086777 
End bp3087859 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content48% 
IMG OID640830800 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001366786 
Protein GI153001105 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value7.07575e-08 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA TTATTCTAAT AATCGCCCTA TTGGCCGCGG CATGGTTTGG ATATCAAGCC 
ATGCAACCGC AAGAGATTGC CACCGCGCAA ATGAAACTAA TGCCTAACGT GGTGATTGCC
ACCGCCGCCA TGGCACCTAT TCGCGATGAA GTGGAAGCTA TCGGCACCAA TAAAGCCGCA
GAATCTGTGA CCATAACCCC TAAAGTCACT GACATGGTGA CAGCACTTAA GTTTGATGAT
GGCGACATAG TCAAAAAGGG TGACTTGCTA GTCCAACTGC AAAATGCCGA GCAGATCGCT
AAGGTTAAAG CCGCGCAAGT CAAAGTCAGT GATAATCAAC GTGAATTCAA CCGTATCAGT
TCGTTAGTCA CCAGCCGCAC TGTGGCAGAG TTAGAACGCG ACAGATTACA AACCCTTATC
GATACCACCC GCGCAGAGCT TGAACAGGCG CAAGCATCAC TCAATGATCG CAGTATTCTG
GCGCCTTTTA ATGGCCGTTT AGGTTTACGC CAAATCAGTG TCGGCAGCCT AGTGTCGCCC
GGCACTGCGA TCACCACCTT GGATGATATC TCTAAGATTA AACTCGATTT TTCAGTGCCT
GAGCGTTTTA TTCAAGATTT AGCCCCAGGT AAGAAAGTTG AAGCCAAAGC TGTGGCCTTT
CCTGATTTTA CCTTCAAAGG CGTGGTGACA TCGATTGATA GCCGCGTAAA CCCAACGACG
CGCACTGTGA TTGTCCGTGC CGAAATCCCC AATCCTGAGC TGCGTTTATT ACCGGGCATG
TTGATGAAGG TCAAACTCAT CAAACGTAGC CGCGAAGCCT TGATGTTGCC AGAATCTGCC
ATTATCCCAA TCCAAAATGA TCACTTTGTT TACAGCGTTA ATGCCGACAA AGTGATTGAG
CGTAAACAAG TCACTATAGG GATTCGTACC CGTGGTTGGG TGGAAATCTT AGACGGTTTA
GCTTTGGGTG AAAACGTGGT TATCCGTGGC TTATTGAAAG TCCATCCTGG CGATAAAGTG
CAAACGGAGT TCGCGGAAAA GTTTAGTTAT CTTGCGGATA CGAGCGCGGA GCCAAGTGTA
TGA
 
Protein sequence
MKKIILIIAL LAAAWFGYQA MQPQEIATAQ MKLMPNVVIA TAAMAPIRDE VEAIGTNKAA 
ESVTITPKVT DMVTALKFDD GDIVKKGDLL VQLQNAEQIA KVKAAQVKVS DNQREFNRIS
SLVTSRTVAE LERDRLQTLI DTTRAELEQA QASLNDRSIL APFNGRLGLR QISVGSLVSP
GTAITTLDDI SKIKLDFSVP ERFIQDLAPG KKVEAKAVAF PDFTFKGVVT SIDSRVNPTT
RTVIVRAEIP NPELRLLPGM LMKVKLIKRS REALMLPESA IIPIQNDHFV YSVNADKVIE
RKQVTIGIRT RGWVEILDGL ALGENVVIRG LLKVHPGDKV QTEFAEKFSY LADTSAEPSV