| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2471 |
|---|
| Symbol | mnmA |
|---|
| ID | 5372382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2947243 |
|---|
| End bp | 2948421 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640830684 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_001366671 |
|---|
| Protein GI | 153000990 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000882731 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGGC TTAACTTCAA CAACCTAGCC AACACACATA CTCAATGGTT TTTAGGATCT
ATGACATCAA TCGAACCCAC TCATACAGGA AAAAAAGTCA TTGTCGGCAT GTCCGGCGGT
GTAGATTCAT CTGTTTCAGC CTATTTGCTT ATGCAGCAAG GCTATCAGGT TGAAGGCCTT
TTCATGAAGA ACTGGGAAGA AGATGATAAC AACGAGTACT GCGCTGCCGC AGAAGATTTA
AAAGATGCCC AAGCCGTATG CGACAAGCTC GGGATCAAGC TACACACAGT TAACTTTGCT
GCCGAATATT GGGACAATGT ATTTGAGTAT TTCCTCGCCG AATACAAAGC CGGCCGCACG
CCAAATCCCG ATATCATGTG CAACAAAGAA ATCAAATTTA AGGCATTTTT AGAATTTGCC
GACGAAATCC TCGACGCCGA TTATATCGCC ATGGGCCACT ATGTGCGCCG CCGCGATAAT
AGCGATGGCA GCACACAAAT GCTCCGTGGC GTCGATGGCA ATAAAGATCA AAGTTATTTC
CTCTACACCC TTAGCCACGA GCAAGTGGCC CGAAGTCTGT TCCCTGTCGG TGAATTGGAA
AAACATGAAG TACGTGAAAT CGCAAAAGAA ATGGGCCTAA TCACCCATGA TAAAAAAGAC
AGCACCGGCA TCTGCTTTAT CGGTGAGCGC AAGTTCACTG AATTCCTAGG CACTTATTTA
CCAGCACAGC CTGGCAATAT CGAAACCCCA GAAGGCGAAG TCATAGGCAC ACACCAAGGG
CTGATGTACC ACACCTTAGG CCAGCGTAAA GGCTTAGGCA TTGGCGGCAT GAAAAACAGC
AATGACGATC CTTGGTATGT CGTCGATAAA GATCTTGAGC GTAACGTGTT GATCGTAGGG
CAAGGCGGAC ACCATCCTCG TTTGATGTCG ACCGGCATGA CAGTTAACCA ACTGCATTGG
GTGGATAGAA CCGGACCTGT CGATGGCTGT CATATCGCTG TGAAAACCCG TTATCGCCAA
CAAGATGTGC CTTGTACTTT GACCTACACA GATGAACACA CCTTGCGCGT GGTCTTCGAT
GAGCCTGTTG CGGCGGTGAC GCCTGGGCAG TCTGCGGTAT TTTATGATGG TGAAGTCTGC
CTAGGTGGCG GCATCATAGA TCAATTGATC CGAGGGTAA
|
|---|
| Protein sequence | MSRLNFNNLA NTHTQWFLGS MTSIEPTHTG KKVIVGMSGG VDSSVSAYLL MQQGYQVEGL
FMKNWEEDDN NEYCAAAEDL KDAQAVCDKL GIKLHTVNFA AEYWDNVFEY FLAEYKAGRT
PNPDIMCNKE IKFKAFLEFA DEILDADYIA MGHYVRRRDN SDGSTQMLRG VDGNKDQSYF
LYTLSHEQVA RSLFPVGELE KHEVREIAKE MGLITHDKKD STGICFIGER KFTEFLGTYL
PAQPGNIETP EGEVIGTHQG LMYHTLGQRK GLGIGGMKNS NDDPWYVVDK DLERNVLIVG
QGGHHPRLMS TGMTVNQLHW VDRTGPVDGC HIAVKTRYRQ QDVPCTLTYT DEHTLRVVFD
EPVAAVTPGQ SAVFYDGEVC LGGGIIDQLI RG
|
|---|
| |