| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2395 |
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| Symbol | |
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| ID | 5369651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 2851113 |
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| End bp | 2854601 |
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| Gene Length | 3489 bp |
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| Protein Length | 1162 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640830609 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001366596 |
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| Protein GI | 153000915 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000829473 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCACA TATCAGCCCT AACGCCGCCA GCCGTCAAAA ATGGCAATCA AATTCAGACT
CTGTCCACCG TTGGCGGCGT TTGCCAAGCC GTTACACTCG CCAGTTTAGC GCGTCAACAT
AAGGGGACGA CCTTAGTTGT CACCAGTGAT ACGCCAAGCG CCTTAAGCTT AGAGCTAGAA
CTGAGTTATT TGCTCAGTAA AACAGGCCTT AAGGTCAGAT TATTCCCTGA CCGCGAAACC
TTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATCT CCCAGCGACT CGAAACCCTG
TCGCAGCTGT CTCAAATTGA GCAAAACATC GTTATCGTGC CCGTCACGAC CTTGATGATG
CGCCTGCCAC CTAAGGCCTA TTTGAGCGCC AACGTGTTTG TGCTGAAAAA AGGCGACAGC
TACAAGTTAC ACGATGTACG CCAGCATTTA ACCGACACTG GCTACCATTC AGTTGAACAA
GTGTATGAAC ACGGCGAGTT TGCCATTCGC GGCTCGATTC TGGATATCTT CCCCACTGGG
ATGAATATGC CACTGCGCAT CGAGCTATTC GATGAAGAAG TGGAGACCAT CCGCCATTTT
GATCCCGAAA CCCAACGTTC ATTGCAACCT GTTGACTCGA TTCGCTTATT GCCCGCGAAG
GAATTTCCGA CCGACAGCTC TGCCATCGAA GGCTTTAGAC AAAGATACCG TCGCCGTTTT
GAGGTCATAG TTAAAGAGCC GGAATCAGTT TATCAGCTGG TGAGCCGCAG CTTGATGCCG
GCGGGGATTG AAAACTACCT GCCGCTGTTT TTTGATGACA CAGCGACCCT ATTCGATTAC
TTGCCCAAGG ACACTCAGTT AGTCACTTTA GGGGATATCG AAAAGTCGGC GCGCGCGCAT
TTGCAAGAAG TCGAACATCG CTATCAAGAC AGACGAGTCG ATCCACTGCG GCCGCTACTG
GCGCCTAAAG AGCTGTATTT ACTCATTGAA GAGTTATTTG CCGCCTTTAA ACCGCTGCCA
CGTTATCAAA TGCACGTGCC GACAGATGGC ACTGAAACGA CAAAAGCTGT GGTGATTGCT
GCCAGCACCC TGCCCGATAT CAGCGCCAAC CATAAATTAA AGCAACCACT GTTAGCGCTG
CAAGATTACG CCAGCAGCGC CAAACGCATG TTGTTTAGCG CTGAGTCCGA GGGTCGCCGC
GAAGCGCTGC TTGAATTGCT CGCTAAAATT CAGCTTAAAC CTGTGCTATT TAACCATTTT
GATGAATTTA TTCAAAGTGA TGCCAAGTTA GGCCTTATCG TGTCGCCGCT GTCACGCGGT
TGTTTGCTGC AGATCAGCGC CAAAGATGGC ATCAGTATCA TTTGTGAAAC TGAGCTCTTC
GGCCATCGAA TTTCCCAGCA ACGTCGCCGT GAAAAACAGC GTCAGATCAG TAACGATGCC
CTGATTAAAA ACTTGGCCGA ACTCAAAGTC GGTCAGCCCA TTGTGCATTT AGAACACGGT
GTTGCCCTCT ATAAAGGCTT AGTCACCCTA GATACGGGTG GACTGGTCGC CGAATACCTG
CAATTGGAAT ACGCCGGCGG CGATAAACTG TATGTGCCAG TGTCTTCATT GCACCTTATC
AGCCGCTACA GTGTTGGCGC CGACGAAGAC GCCCACTTAA ATAAACTCGG CAATGAGACG
TGGGCTAAAG CCAAGAAAAA AGCCATTGAA AAAATCCGCG ATGTTGCGGC CGAGCTGCTT
GATGTCTATG CCCGTCGCCA ATCTCGTCCC GGCGAAAGCT GCGAGATTGA CGAAGATGAA
TACGCCCAAT TCGCTCGCGG TTTCCCCTTC GAGGAAACCG TCGATCAAGA AAGCGCCATC
ATCGCCGTGT TAGCCGATAT GCAATCGCCA ACCGCAATGG ACAGATTAGT CTGTGGCGAT
GTGGGCTTTG GTAAAACCGA AGTCGCCATG CGCGCCGCCT TTGTGGCCGT CAACGCCGGT
AAACAAGTGG TCGTGCTGGT CCCGACCACA TTGCTTGCCC AGCAACACTA TGAAAACTTT
AAAGACAGAT TTGCCGACTG GCCTGTGGTC ACCGAAGTGA TGTCACGCTT TCGCACCGCC
AAAGAGCAGA CTCAAGTGCT GCAGCAATTG GAAGAAGGCA AAGTCGATAT CGTTATCGGT
ACTCACAAGT TATTGCAATC TGAGGCCAAG TTTGAAAACT TAGGCCTGCT GATCATCGAC
GAAGAACACA GATTCGGTGT GCGTCAGAAA GAGAAAATCA AGGCACTGCG TGCGAACGTG
GATATCCTAA CTCTGACGGC AACGCCTATT CCACGGACCT TAAATATGGC CATGTCGGGC
ATGCGCGATT TATCGATTAT CGCCACCCCG CCCGCCAAAC GTTTAGCGGT AAAAACCTTT
GTGCGGGAAT CCGATCCTGC AACCGTGCGC GAGGCCATTT TGCGGGAAAT TCTCCGTGGC
GGCCAAGTGT ATTACCTGCA CAATAATGTT GAAAGTATTG AGAAATGTGC CCAAGGTATT
ATCGATTTAC TGCCAGAAGC GCGGGTAGTC GTCGCCCACG GTCAAATGCG TGAGCGCGAC
CTTGAGCGGG TGATGTCTGA CTTTTATCAC CAAAGATTCA ACGTGTTAGT CTGTACCACT
ATTATCGAAA CTGGTATCGA CGTTCCGAGT GCCAACACCA TTATTATCGA GCGCGCCGAT
ACCTTTGGTC TGGCGCAGTT ACACCAATTA CGCGGCCGCG TCGGACGCTC GCACCATCAG
GCTTATGCCT ATTTGATGAC GCCGCATCCT AAACGTATGA CTCCCGATGC GCGTAAGCGT
TTAGAAGCCA TTGATGCCCT TGAAGATCTC GGTGCAGGCT TTATGCTCGC GACCCAAGAT
TTGGAGATCC GCGGTGCAGG TGAACTCTTA GGTGATGAGC AGAGCGGCCA TATTTCGAAA
ATTGGTTTTA GCTTATACAT GGAAATGCTC GAAGCGGCAG TCAAAGCCTT AAAACAAGGC
AAAGAGCCAT CGCTGGCGCA AATGCTGAAT CAACAATGTG AAATTGAACT GCGTATCCCT
GCCCTACTGC CTGAGGCCTA TGTGAGCGAC GTGAATATTC GTCTATCGCT CTATAAACGC
ATCGCAGGTT GCGAAACCGA AGCGGCGCTG GATGAGTTAA AAGTCGAATT AATCGACCGT
TTTGGCCTAT TGCCCGAACC GACGCGCAAC TTAATGGAAA TGACCCTCTA TAAACATGAG
GCGACTCGCT TAGGGGCGAC TAAAATAGAA GTGCACAGTA AAGGTGGCAG CATCGAATTT
AGTCATGATC ACGTCATCGA TCCTATGTTT ATTATTGGAT TACTCCAAAG CCAGCCACAA
ATCTATCGAA TGGAAGGACC GAATAAGTTA AAGTTCAGCC TTGCGGCCGA AACCAGCAAA
GACAGGCTCG CTTTAGTGAA ACTCTTGCTC GAACAATTAT CGCAACATCG TCTTGGAGAT
AATAAATAG
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| Protein sequence | MTHISALTPP AVKNGNQIQT LSTVGGVCQA VTLASLARQH KGTTLVVTSD TPSALSLELE
LSYLLSKTGL KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQLSQIEQNI VIVPVTTLMM
RLPPKAYLSA NVFVLKKGDS YKLHDVRQHL TDTGYHSVEQ VYEHGEFAIR GSILDIFPTG
MNMPLRIELF DEEVETIRHF DPETQRSLQP VDSIRLLPAK EFPTDSSAIE GFRQRYRRRF
EVIVKEPESV YQLVSRSLMP AGIENYLPLF FDDTATLFDY LPKDTQLVTL GDIEKSARAH
LQEVEHRYQD RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQMHVPTDG TETTKAVVIA
ASTLPDISAN HKLKQPLLAL QDYASSAKRM LFSAESEGRR EALLELLAKI QLKPVLFNHF
DEFIQSDAKL GLIVSPLSRG CLLQISAKDG ISIICETELF GHRISQQRRR EKQRQISNDA
LIKNLAELKV GQPIVHLEHG VALYKGLVTL DTGGLVAEYL QLEYAGGDKL YVPVSSLHLI
SRYSVGADED AHLNKLGNET WAKAKKKAIE KIRDVAAELL DVYARRQSRP GESCEIDEDE
YAQFARGFPF EETVDQESAI IAVLADMQSP TAMDRLVCGD VGFGKTEVAM RAAFVAVNAG
KQVVVLVPTT LLAQQHYENF KDRFADWPVV TEVMSRFRTA KEQTQVLQQL EEGKVDIVIG
THKLLQSEAK FENLGLLIID EEHRFGVRQK EKIKALRANV DILTLTATPI PRTLNMAMSG
MRDLSIIATP PAKRLAVKTF VRESDPATVR EAILREILRG GQVYYLHNNV ESIEKCAQGI
IDLLPEARVV VAHGQMRERD LERVMSDFYH QRFNVLVCTT IIETGIDVPS ANTIIIERAD
TFGLAQLHQL RGRVGRSHHQ AYAYLMTPHP KRMTPDARKR LEAIDALEDL GAGFMLATQD
LEIRGAGELL GDEQSGHISK IGFSLYMEML EAAVKALKQG KEPSLAQMLN QQCEIELRIP
ALLPEAYVSD VNIRLSLYKR IAGCETEAAL DELKVELIDR FGLLPEPTRN LMEMTLYKHE
ATRLGATKIE VHSKGGSIEF SHDHVIDPMF IIGLLQSQPQ IYRMEGPNKL KFSLAAETSK
DRLALVKLLL EQLSQHRLGD NK
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