| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2323 |
|---|
| Symbol | |
|---|
| ID | 5370094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 2772314 |
|---|
| End bp | 2774437 |
|---|
| Gene Length | 2124 bp |
|---|
| Protein Length | 707 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640830537 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_001366524 |
|---|
| Protein GI | 153000843 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.16398 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGTT CAAACCAAAA CCCAGCTGTA GCTGCCAATG CGATAGAAAT CACAGCGCCA
GAATCGACAA TCCCTAATAA ATCGACAGTG CCTAATAAAT CGGCTGAGTC TAGTCAATCA
ATCGTGCCTA AGGCGCCGAG TCGCCGCGAA ACCCGCGCGC AGGCCCAAGC CTTTATCGAT
ACGTTAGCGC CACTGCAACA TCCTAATTCA CAAAAGATTT ATCTCGAAGG TTCCAGTGCC
GATATTCGCG TTGGCATGCG GCAAATTCTG CAGACTGACA CGCTTGTCGG CGGTACAGAT
GATGCGCCCA TCATGGAAAA AAATCCGCCA ATTCGCGTGT ACGATTGCGC CGGACCTTAT
TCCGATCCTG AGGCCGACAT CAATGTGCGT CTAGGCCTTG GTAAATTAAG ACAAAACTGG
ATTCTAGCCC GCAACGATAC AGAGCAATTA CCCTGCGCGA CCTCAGATTT TACCCAACAA
AGACTCGCTG ACGACGGTTT AGACCATCTG CGTTTTGAGG TGGGCTCGAG TGCCATTGTC
CGCCCACGCA GAGCGCTGCA GGGCAAACGA GTTAGTCAAT TACACTATGC CCGTCAAGGG
ATTATCACGC CCGAAATGGA ATATGTGGCG ATCCGCGAGA ACATGGCACT TGCGCAAGTA
CAGGATGAAA TCCTCAATCG TAAAGCCAAG GGCGAAGCTT TTGGTGCCTT AGTCGGCGAA
CCGATTACCG CCGAATTTGT CCGCGCCGAA GTTGCCCGTG GCCGCGCGAT TATTCCGCTG
AATATTAACC ATCCCGAAGC CGAACCTATG ATTATCGGGC GTAATTTTCT GGTGAAAGTG
AACGCCAATA TCGGTAACTC GGCGGTGACG TCTTCCATCG AGGAAGAAGT GGAAAAGCTT
GTCTGGTCAA CCCGTTGGGG GGCAGATACT GTCATGGATT TATCCACGGG TCGTTATATT
CACGAAACCC GCGAGTGGAT CATCCGCAAC TCACCAGTGC CCATCGGCAC AGTGCCGATT
TATCAAGCGC TGGAGAAAGT GAACGGCGTG GCAGAGGATT TAACGTGGGA AGTGTTCCGC
GATACCTTGA TTGAACAAGC TGAGCAAGGT GTTGATTACT TTACTATTCA TGCTGGTGTG
CTGCTGCGTT ATGTGCCGAT GACGGCTAAA CGTGTTACTG GGATCGTTTC TCGCGGCGGT
TCAATTATGG CCAAATGGTG CCTGAGTCAT CACAAGGAAA ACTTCCTCTA CAGCCATTTT
CGTGAGATCT GTGAGCTTTG CGTCGCCTAC GATGTATCCC TGTCTTTAGG TGATGGTATG
CGTCCCGGAT CGATTGCCGA CGCTAATGAT GCTGCCCAGT TTGCAGAGCT TGAAACCTTA
GGTGAGCTAG TCAAAATCGC GTGGGAATAC GACGTACAAA CCATTATCGA AGGGCCGGGA
CATATCCCGA TGCAGCTCAT TAAAGAGAAC ATGGACAAGC AGTTAGCTCA CTGCGATGAG
GCGCCGTTTT ACACGCTTGG CCCGCAAATC ACTGATATCG CACCTGGGTA TGATCATTTC
ACCTCCGGCA TAGGCGCGGC CATGATTGCT TGGTACGGCT GCGCTATGTT GTGTTATGTC
ACGCCAAAAG AACACTTAGG ATTACCGAAT AAACAAGATG TTAAGCAAGG TTTGATTGCT
TATAAGATTG CCGCCCACGC CGCCGATGTG GCGAAAGGTC ATCCGAGTGC GCAAATTCGT
GATAATGCGC TGGCAAAGGC GCGGTTCGAA TTCCGCTGGG AAGATCAATA TAACTTAGGA
CTCGATCCTG AAACCGCACG TGCTTATCAC GATGAATCTT TACCGCAGGA ATCCGCTAAA
GTCGCGCATT TTTGCTCTAT GTGCGGCCCT AAATTTTGTT CGATGAAAAT CACCCAAGAT
GTGCGCGCCT ATGCCGCTGG CTTAGAGGCG GCACAAGCGA AGGCGGAGCA AGTTGAAGCG
GCTGCCCAAG CCATGCAAGT CACAGTCAAG ACGCCGCAGG AGTTGGAAGC GGCAATGGCG
CTAAAATCGG CAGAGTTTGC TGCTTCGGGC GCCGAGATCT ATCACGTGAA AGACAAGCTT
GTCGCCGAAG CTGAGGAAGC CTAA
|
|---|
| Protein sequence | MSSSNQNPAV AANAIEITAP ESTIPNKSTV PNKSAESSQS IVPKAPSRRE TRAQAQAFID
TLAPLQHPNS QKIYLEGSSA DIRVGMRQIL QTDTLVGGTD DAPIMEKNPP IRVYDCAGPY
SDPEADINVR LGLGKLRQNW ILARNDTEQL PCATSDFTQQ RLADDGLDHL RFEVGSSAIV
RPRRALQGKR VSQLHYARQG IITPEMEYVA IRENMALAQV QDEILNRKAK GEAFGALVGE
PITAEFVRAE VARGRAIIPL NINHPEAEPM IIGRNFLVKV NANIGNSAVT SSIEEEVEKL
VWSTRWGADT VMDLSTGRYI HETREWIIRN SPVPIGTVPI YQALEKVNGV AEDLTWEVFR
DTLIEQAEQG VDYFTIHAGV LLRYVPMTAK RVTGIVSRGG SIMAKWCLSH HKENFLYSHF
REICELCVAY DVSLSLGDGM RPGSIADAND AAQFAELETL GELVKIAWEY DVQTIIEGPG
HIPMQLIKEN MDKQLAHCDE APFYTLGPQI TDIAPGYDHF TSGIGAAMIA WYGCAMLCYV
TPKEHLGLPN KQDVKQGLIA YKIAAHAADV AKGHPSAQIR DNALAKARFE FRWEDQYNLG
LDPETARAYH DESLPQESAK VAHFCSMCGP KFCSMKITQD VRAYAAGLEA AQAKAEQVEA
AAQAMQVTVK TPQELEAAMA LKSAEFAASG AEIYHVKDKL VAEAEEA
|
|---|
| |