Gene Shew185_2066 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_2066 
Symbol 
ID5371126 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp2477344 
End bp2479248 
Gene Length1905 bp 
Protein Length634 aa 
Translation table11 
GC content44% 
IMG OID640830270 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001366271 
Protein GI153000590 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value8.03773e-09 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCATGT CAAAATCATA TCCAATTTTT TTACTGCTTA TTTTCTTAGG TCTCTTTGCT 
TGGGTGTATC AAAGCGAAAA CAGCCAATTG CAAGTCCAAC AGCAGCAAGA ACTCGATAGC
TTTAAATCTA GCTTAAGCCG CTACCAACAA TGGCAGGGTA ACGGTGTAGA ACTCTTTAAA
AAACTTTCTG AAAACTACTC ATTCCAGTTC TTCCAATATA TTGATGATAC CGACGGCCAA
CTGAGCCATA CCGAAGGAAG CTTAGACAGT AAACATCCCC ACCCTTTAGC GAGTTTATTC
TCCATCGAAC TCAGCCACAC ACAAAAATTG GCATCGGGTC GTTTACAGGT CAAGCTCAGT
GCAAACCAAG CGATTAATAC TGCAATTAGT AACACTGAAA AACTCGGTGT CATGTTGCTA
GCGACTTACC TTATTTTGCT GTTAGTGTTT ATTCTATTAA TGTCGAAACT CAGGGCTGCA
GTACGTTATG CTGCTGATTA TATTTCAAAA ATACCAGAGT TAGGCTTTTC TGCCGTCGCA
GCTTCGAAAC TGACTGGCGA GCTCACCCCT ATTGGTATCT CCCTCGAAGA ATGTCGCCTG
CAACTTAAAG CCCAAATCGA TAAGCTCAAT CAAGAAAATG AAAAACTGCA TAAAGCAGCC
TATCAAGATG CCGTCACAGG CTTTGGTAGT CGCCAACGGT TTACCCAAAA ATTAGAAACC
ATTAGTCATC CCGATATCCC TCAACTTGGG CTGATGGCGA TGATTAAAGC GACCGAGCTG
ACCCTCATTA ATCAAAAACA AGGCCGTTCC GCGGGTGATG ATTATCTTTC GAGTGTGGCC
AATTGCATCC GCAAAGCTTG TAGCAAATAC GTAGATGCCG AATGTTTTAG GGTATCGAGT
GCCGATTTTG CGGTGTTTAT TCCCGATGTC ATGCTAAAAG ATGCACCGAA ATTTTTAGAC
CAATTAAAAA TTTACCTCGA TGAATATCAG CAGATGACGA GTGCAGAATC CGTCGCCCAT
ATAGGCTTAG TCCCCTATCG CCAAGGTACC GAAGCGGTAA ATTTACTGAC AATTGCCGAT
ACTGCGGTCA GCATAGCGCA GACCCTTGGC CCCAATAGCT ATCATATCCA AGAGAAACTC
AATGGAGATG AGCAGTTTGG TGACGATCGT TGGAAGATGG CAATCCATGA TTTAGTGACA
CGCCAAGCAT TGAAATTCTA CCAGCAGCCT ATTCAGCCAT GCCGTGGCGA TGTTGAGGTT
TACCGTGAGT TGTTGGCGCG CTTTTACAAT AGCGAAGGCA AATTCTTACC TACCACCACA
GTGATTGCCA TGGCTGAACG TCACGGTATG AGTTCGGAAT TGGATAAACT GGTCGTGATC
AGTGCATTAA AGATACTTAA AGAAAACCCG ACTATTACCG GTAACTTTGG TATCAATATC
AGCGCATTTT CAGCCCATCA AGACATGTTT GTCGCTTGGC TAAAAGACAT ATTAGGTAAG
CAAAAATACA TAGCATCGCG CTTAGTATTT GAGATCAACG AGTCCGGCAT GCAGTCTAAC
TTAGGGGCGA GTTATAAATT TGTCCGCGAA GTGCACAGTG TCGGTTCACG AGTGTCGATT
GAGCGTTTTG GTATGAGCTT TACCTCCTTC AAATTCTTCA GCGAAGTGCG GCCCGACTTC
ATCAAGCTCG ATGGTAGTTA CACTTCTAAT ATCGATGAAG ACAGCAACAA TAAGTTCTTC
GTGCGAATGA TGGTGGATGT CGCCCGACGA ATTGGCATCC GGGTCATCGC AACCAGTGTC
GAACGCCAAG AAGAAAAATT AACCCTCGAA AAACTCTTAG TCGATGGATT GCAGGGCTAT
TACATAGCAC AACCCCAAGC CATGGCCATT ACAGATCAGA TTTAA
 
Protein sequence
MAMSKSYPIF LLLIFLGLFA WVYQSENSQL QVQQQQELDS FKSSLSRYQQ WQGNGVELFK 
KLSENYSFQF FQYIDDTDGQ LSHTEGSLDS KHPHPLASLF SIELSHTQKL ASGRLQVKLS
ANQAINTAIS NTEKLGVMLL ATYLILLLVF ILLMSKLRAA VRYAADYISK IPELGFSAVA
ASKLTGELTP IGISLEECRL QLKAQIDKLN QENEKLHKAA YQDAVTGFGS RQRFTQKLET
ISHPDIPQLG LMAMIKATEL TLINQKQGRS AGDDYLSSVA NCIRKACSKY VDAECFRVSS
ADFAVFIPDV MLKDAPKFLD QLKIYLDEYQ QMTSAESVAH IGLVPYRQGT EAVNLLTIAD
TAVSIAQTLG PNSYHIQEKL NGDEQFGDDR WKMAIHDLVT RQALKFYQQP IQPCRGDVEV
YRELLARFYN SEGKFLPTTT VIAMAERHGM SSELDKLVVI SALKILKENP TITGNFGINI
SAFSAHQDMF VAWLKDILGK QKYIASRLVF EINESGMQSN LGASYKFVRE VHSVGSRVSI
ERFGMSFTSF KFFSEVRPDF IKLDGSYTSN IDEDSNNKFF VRMMVDVARR IGIRVIATSV
ERQEEKLTLE KLLVDGLQGY YIAQPQAMAI TDQI