Gene Shew185_2062 details

Gene Information

• Locus tag: Shew185_2062
• Symbol: rnfD
• ID: 5373222
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: -
• Start bp: 2472297
• End bp: 2473346
• Gene Length: 1050 bp
• Protein Length: 349 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640830266
• Product: electron transport complex protein RnfD
• Protein accession: YP_001366267
• Protein GI: 153000586
• COG category: [C] Energy production and conversion
• COG ID: [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD
• TIGRFAM ID: [TIGR01946] electron transport complex, RnfABCDGE type, D subunit

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.000244661
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGTTTA AAATAGCCTC ATCACCCCAT GTAACGCGTA ACTTGCATAC CTCAACGGTC 
ATGCAAAGGG TGATTTTATG TTTACTGCCG GGCCTTGTCG TGCAATGTGC CTTTTTTGGC 
TGGGGCACAC TTGTGCAAGT CCTGCTGGCG ATCCTCGTCG CCTTAAGCTG CGAAGCCGCT 
GTGATGAAAC TTCGCAATCG CAATATCAAA GCAAGCCTTA GCGATAACAG CGCCATGCTC 
ACCGCCATCT TAATTGGTGT CGCCATTCCG CCCCTCGCCC CTTGGTGGAT GATCGTCATG 
GGCACCGCCT TTGCGATCGT TATAGTTAAG CACCTCTACG GCGGCTTAGG CCATAACCTA 
TTCAACCCTG CAATGGCGGC ATATGTATTG CTGTTAGTCT CGTTCCCAGT GCAAATGACC 
ACCTGGATTG CACCGAGCAC CGTCGCACTA CATTCACCCA GCCTTGTTGA AAGCTTGCAG 
CTTATCTTCA ATATTGGCGC CCATGTCAAC ATGGAGCAAT TTCGTTTAGG CATTGATGGC 
ATGACAATGG CGACGCCACT CGATACCCTC AAAACCGATT TATCCATGGG ATTAACCACC 
ACAGAAAGTC TCACCAAAGC CATTTTTGAT GGCAGTACAG GCGTAGGTTG GTTCTGGGTG 
AACTTGGCCT ATCTTGCTGG CGGGTTAGTG TTACTTAAAC TAAAAGCCAT TCGCTGGCAC 
ATCAGCACTG GCGTGTTATT AGGGCTCTTT GTGGCATCGA GTATCGGTTT CTTACTGTCA 
CCCGATACCC AAGCCAGTCC ACTGATGCAT CTGTTTTCTG GCGCGACCAT GTTAGCGGCG 
TTTTTTATCG CCACCGATCC CGTTACAGCC GCAACCAGTC CCCGTGGTCG CATTATCTTT 
GGCGCGTTAA TTGGTGTGTT GGTGTATATC ATCCGCACGA AAGGCGGTTA CCCTGACGCC 
TTCGCCTTTG CCGTGTTACT GGCCAACCTC TGTGCGCCCT TTATTGACTA TTACGTGCGT 
CCACGCACCT ATGGTCATTC AACGAGCTAA 

 

Protein sequence

MAFKIASSPH VTRNLHTSTV MQRVILCLLP GLVVQCAFFG WGTLVQVLLA ILVALSCEAA 
VMKLRNRNIK ASLSDNSAML TAILIGVAIP PLAPWWMIVM GTAFAIVIVK HLYGGLGHNL 
FNPAMAAYVL LLVSFPVQMT TWIAPSTVAL HSPSLVESLQ LIFNIGAHVN MEQFRLGIDG 
MTMATPLDTL KTDLSMGLTT TESLTKAIFD GSTGVGWFWV NLAYLAGGLV LLKLKAIRWH 
ISTGVLLGLF VASSIGFLLS PDTQASPLMH LFSGATMLAA FFIATDPVTA ATSPRGRIIF 
GALIGVLVYI IRTKGGYPDA FAFAVLLANL CAPFIDYYVR PRTYGHSTS