Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew185_2001 |
Symbol | |
ID | 5372185 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella baltica OS185 |
Kingdom | Bacteria |
Replicon accession | NC_009665 |
Strand | - |
Start bp | 2383486 |
End bp | 2386089 |
Gene Length | 2604 bp |
Protein Length | 867 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640830205 |
Product | TonB-dependent receptor |
Protein accession | YP_001366207 |
Protein GI | 153000526 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00988263 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAAGTT CTGTATTTTT GTGCGCTGTT TTTGGGTTGG CCTTGTCGCC CGTTGCTTTA GCTGTAGCCA ATGAACTAGA AAAAACAACT GAGCAACCTA CCGCAGATGC ACCGGTCGAG CGAGTCGCAG TCACAGGTTC ACGTCTAAAA GGGGTGGATA TGGAAGGCGC TAATCCACTA CAAAGTTTTA CCCAGGATGA CATCACTAAA CGCGGTTACG AGAGTGTGAG TGAGTTTCTA CGCGATCTCC CACAAGCTTC AAGTGCGGGG ACTTTCTCGG AAACAGGGGG TGTCGGTGGA GCCGATGGAG CACCAGCTGG CGCATCCGGT GTCAGTTTGC GCGGATTGGG TTCAAGCTCA ACCTTAGTGC TAGTCAATGG CCGAAGAGTC GCCGTTGATT CCTTCTCTAA TGGTTCTGAC TCGTTTGTGA ACGTCAATTC TATCCCTTTA TCTGCCATTG AACGCATCGA TGTGTTAACC GATGGTGCAT CGTCCATCTA TGGTTCGGAT GCCATTGCCG GTGTAATTAA CTTTATCCTC CGTAAGGATT TTGTCGGGCA TGAGCTCAGT GCCCAATATG GGGATGATAC TTCTGATCAC GATGCCAGCC GTAAGAATCT GACCTACGCT GGCGGCTTTG CCACAGAAAA CAGCAATACT ACGGTTGTAG TCGATTATGC GACGCGAAAC GCCATCTTTA ATAGCGATAG ACCTGTTAAT GTCACCTTTG AATCTAGCAC TCGTATGACC ATAGATGGTG AAGATTACGC TGAGTCTTGG TGTGGCGATG ATACCCAAAA AAGTGGTACA CATTGCAATT ATGACTATGT TATTCAACGC GCTATCCAAC CTGACTTTGA GAACATAGGC ACGACCTTTA ATCATATTTA TCGTCTAGAT AATGGATTGG AGTTTTTTGC TGAAGGCATG TATCAAAAGA ATACCGGTTC AGCCTATGAG GCGCCTGCGG GATATACAGT GGATGTTGCT GGTGATTCTG CCAACATTCC CCAGTATGTT CACGACATTG ACATGCTAGA TGGCAGTGTC AGCGACGTTA TCACTGTTCG AACTCGTTTC CCTGAGCGTC GAGTACAGGA ATATGACACT CAGAGCTATC GAGTCCTCGC TGGACTGCGC GGTGAACTTG CCGACTGGAG CTGGGAAACC GCGGCGAGTT ATGGCAAATC AACAAACGAA ATCACCAATG TTGCTGGCTA TATGAATGCC ACTAAACTGG ATGCCGCCGT GACGGCGGAT GAATTTAATC CGTTCAATTT AGGCCGTGAT AGTAGCGCTG CACAAATTGC TGCCCTGCGC GATCCCGGCA TTCGTAAAGG TGAATCAGAG GTGTTGTCGC TGGATTTTAA TATCAGTGGC GATCTGTTTG CATTACCCGC AGGTACAGTA AGCTCGGTTT TTGGTGGAGA GCTGCGAAAA GAGCAAATAT TTGATAGGCC ATCCATCAAC GCCGTTAATA ACGAAATTAT CGGCTTAGGC GCAAGCGATG CCGAAGCGGA CCGGACGCAA TATGCTATGT ATGGCGAGTT TAATTTCCCC ATTACCGACA CCTTAGATGT GATCGCAGCT TTACGTTACG ACCACTATAG TGACTTTGGT GGCGATGTTA ACCCTAAAAT ATCAATGCGT TATCGCCCTC TTGAGGATTT AGTATTAAGG GCATCATGGA GTACAGGTTT TAGAGCCCCT TCCTTATCCC AATTAGGCGC AGGGACGTCG CTCAGCAGCC AGTATATCAA TTGCGGTTCG GCCGAACCTT ACAATGCCTT ATGCGGTACT GTTGGCGCCG AGTTTGGCGA ACTCGAGTTT GACCAAGAAA CCATAGGCAA TAAGGATTTA TCCGCAGAAA AATCTGCCGC CATTAACGTT GGCGTCTCTT GGAACCTCAC CGAAGCACTA CAATTGACCG TCGATTACTG GCGCTACGAG CACGATGATA TTGTTGATAT TGATGCCAAC ACTACCTTGG GCGCCTGTAT TAAAGACAGT ACAAAAATCG TGACTAGCGT TGCAGAACTG GGGGATGAAT TTGGCTGTGT TGTTGATGGC CAAGGGGATA TCAGCTTCTT ACGCACCGGC TATTTTAACG TCGGCAATCA AAATACTGAT GGCATCGACT ACAAGCTAGA CTATCGCTTA GACACTGAAA CCGCAGGTGA ATTTAAGTTT TATGTTGCGG GCACTGAAAC CCTGTCATTT GAAAGACAAG TTACACCTTC AACCCCAGTG GAAGATTTAT TAGGGCGGTT AAGTGGCGCC TCCGAAATTG CTCGCCCTGA AAGCGTGCTT GATCTAGGAA CCGACTGGCA GCTCAACGAT TGGAGTGCCA GTTTATCGGG TCACTACATC AGTTCATTGG GTGATGGTGA CTTTAAATTT GATAACGAAA CCGTCGACAG TTGGCTCACC TTCAGTGCGA GCCTTGGTTA TGAGTTAAAT GAGCACCATA GCTTTTTGGT GTCAGTACGT AACCTGACAG ATGAAGAACC GCCCTACGCC TCCTCTCCAA CCAATGGCTA TGCAAGCTCA GTCCATGATT GGTTAGGCCG TCGCTGGAAC GTACGTTATA CCTTCAAGTT TTAA
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Protein sequence | MRSSVFLCAV FGLALSPVAL AVANELEKTT EQPTADAPVE RVAVTGSRLK GVDMEGANPL QSFTQDDITK RGYESVSEFL RDLPQASSAG TFSETGGVGG ADGAPAGASG VSLRGLGSSS TLVLVNGRRV AVDSFSNGSD SFVNVNSIPL SAIERIDVLT DGASSIYGSD AIAGVINFIL RKDFVGHELS AQYGDDTSDH DASRKNLTYA GGFATENSNT TVVVDYATRN AIFNSDRPVN VTFESSTRMT IDGEDYAESW CGDDTQKSGT HCNYDYVIQR AIQPDFENIG TTFNHIYRLD NGLEFFAEGM YQKNTGSAYE APAGYTVDVA GDSANIPQYV HDIDMLDGSV SDVITVRTRF PERRVQEYDT QSYRVLAGLR GELADWSWET AASYGKSTNE ITNVAGYMNA TKLDAAVTAD EFNPFNLGRD SSAAQIAALR DPGIRKGESE VLSLDFNISG DLFALPAGTV SSVFGGELRK EQIFDRPSIN AVNNEIIGLG ASDAEADRTQ YAMYGEFNFP ITDTLDVIAA LRYDHYSDFG GDVNPKISMR YRPLEDLVLR ASWSTGFRAP SLSQLGAGTS LSSQYINCGS AEPYNALCGT VGAEFGELEF DQETIGNKDL SAEKSAAINV GVSWNLTEAL QLTVDYWRYE HDDIVDIDAN TTLGACIKDS TKIVTSVAEL GDEFGCVVDG QGDISFLRTG YFNVGNQNTD GIDYKLDYRL DTETAGEFKF YVAGTETLSF ERQVTPSTPV EDLLGRLSGA SEIARPESVL DLGTDWQLND WSASLSGHYI SSLGDGDFKF DNETVDSWLT FSASLGYELN EHHSFLVSVR NLTDEEPPYA SSPTNGYASS VHDWLGRRWN VRYTFKF
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