Gene Shew185_1892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1892 
Symbol 
ID5372913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp2257638 
End bp2258747 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content46% 
IMG OID640830095 
Productribonuclease D 
Protein accessionYP_001366098 
Protein GI153000417 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.12189e-10 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTCAGCGT TTCAATATGT GAGTGATGAA GCAAGCCTTA ATGCCCTCGT TGCCCAATAT 
AAACAGAGTA AGATACTCGT GTTAGATACC GAGTTTGTTC GTACTCGTAC TTATTATGCC
AAGTTAGGTT TGATCCAAGC CTATGATGGT AAAACCTTAG CTTTGATTGA TCCTGTGGCT
TTACCTGATT TAGCCCAGTT TTGGGCGCTG TTATCGGACC CGAATATCAT TAAGTTAGTG
CATTCCTGCA GTGAAGACTT AGAAGTGTTT GCCCATTATG GTAAATGTCA GCCTACGCCT
TTGTTTGATA GCCAAATTGC AGCTTCTTTG TGTGGAATGG GCCATGGTGT AGGTTATGCC
AAGTTAGTTG AAACTTGCCT TGGTGAAGTG ATCGATAAAG GTGAGTCACG TACCGATTGG
ATCCGCCGCC CTTTAACGGA AGCACAGTTA AGCTACGCCG CGAATGACGT CTTGTACTTG
TATCAGCTCT ATCCTCAACT TGAAGCGAAA CTCAGCGCCC AAGGGCGTTT AGCTTGGTTA
TACGAGGAAG GGGAAAGGAT GACCCAGGGC AGGCTTGCCG ATCCTGATCT CGACACGGCT
TATTTGAAAG TGAAAAATGC TTTCCAACTA ACCGAAATCC AATTGGCTTA CCTTAAAGTG
CTTGCTAAGT GGCGTCTTGA AAAAGCCTTA GTGCGTGATT TAGCCCTAGG TTTTGTGGTC
AAAGATCATG GCCTTATCGC ATTAGCGAAG AAGCAACCTA AATCCTCGGC TGACTTGTTT
AAGCTCAATG ATTTGACTGA GCAAGAAAAA CGTATCCACG GCAAAGATCT ATTACGTGTG
CTGCAAACCG CTGATTTGGT CAATTTACCC GAATTAGTGG ATGTGTTGGC GTTGAAGTCG
GGCTACAAAT CGGCCTTTAA GGCGATTAAA AGCTGCTTAG TCGAGTTGTG CGAACAGCAT
GATGTGCCGC AGGAAATGCT CGGTTCTAAA CGTCATATCC ATGAGTTTTT GCAATGGCGT
TGGGATAAGC AACAAGGGGA TTTGCCCGCT GTGTTATGCG GATGGCGGGG CGAGATTGCC
GCTGAGTCCC TAGCTAAGCT TGAGGTCTAA
 
Protein sequence
MSAFQYVSDE ASLNALVAQY KQSKILVLDT EFVRTRTYYA KLGLIQAYDG KTLALIDPVA 
LPDLAQFWAL LSDPNIIKLV HSCSEDLEVF AHYGKCQPTP LFDSQIAASL CGMGHGVGYA
KLVETCLGEV IDKGESRTDW IRRPLTEAQL SYAANDVLYL YQLYPQLEAK LSAQGRLAWL
YEEGERMTQG RLADPDLDTA YLKVKNAFQL TEIQLAYLKV LAKWRLEKAL VRDLALGFVV
KDHGLIALAK KQPKSSADLF KLNDLTEQEK RIHGKDLLRV LQTADLVNLP ELVDVLALKS
GYKSAFKAIK SCLVELCEQH DVPQEMLGSK RHIHEFLQWR WDKQQGDLPA VLCGWRGEIA
AESLAKLEV