| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1869 |
|---|
| Symbol | |
|---|
| ID | 5371130 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2229030 |
|---|
| End bp | 2230739 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640830072 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001366075 |
|---|
| Protein GI | 153000394 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.620953 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACATTC GTACGGTCGA AATTGAAAAC TACCGAGCCT TCAAAAGCTT CAAAATCAAA
CTTTCACCAC TTAGCCTAAT TATCGGTGAA AACGAAGCAG GCAAAACCAA CCTATTTGAC
GCACTTGCTC TGCCACTTAA TAGCAACGAC ATAAGCTTCA ATAAGAAACG TCTATCTGTA
TCGGACATCA ACCGCGAAGC AATCAAAGAC TTTTATCAAG CTATCATCAA CGGCAAGGGA
GATGATGAGA TCAAGGCTTT GATTCCAAAG GTTCGAGTTG AGGTCGAGTT CACTGACCCA
AAGAACTTTA TTGAAGAAGG CGTTATTGGT AAGTGGATAA TCGGAGAAGA AGCCGACGAG
AGTTATAAGA TTCGGTACGA CTTCAGGCCT AAAGATGCAG ATCATTTTGT AAAGAGTGCC
AAAGAATTAC TCGACGGCAT TGAGGACATC AAAGAAACAC GCTGGTTTAA CTTACCAATT
GAGCTTTACG ACTATGATGT AACGCAAAGC AATAATGGGT TAAAGGTTAG CTATTCTGAT
TTAAGACTTA TAGCCATCAA CTCTATCAAC GCCGAGCGTG ACGACTTTGC TGAAAATAAT
ACACAGAAAT CAAACAACAT TCTGACAAAA ATGCTTATTT CCGCTCTCGA GGATTCCGAC
AAGGCCAAGA TTAACAGCGC GTACACTTCT TTCTTTGATG AAATCGAAAG TACAGAGACA
TTCAAAAAAA TCGTTACACC TGATCCAGAC TTCGAGAACT TCTTCGACGA AATTGTTGAT
AAGCTTGAAT GTATCCCCAA CCTGCCAAAT TTAAAGAGCA TCCTATCCAA CATAACCTTG
AAGTCTGGTG AAAGCTACCT ATATCAGCGT GGCCTTGGGT ATCGTAATCT TGTTTTCATT
TACCTATTAT TTGAGTTCTT CAAAGGCAAC AAGAATGCAC TCAACCTCTG CTGTATCGAA
GAACCTGAAG CACACCTTAG CGTCAACAAC CTCCGCTTTG CAACTGACTT CATATACAAG
AGCACACAAA AAGGCGGCTC ATCTCTACAA ACGCTAATTA GCTCCCATAG CCCTCAAGTC
ATCAATAAAC TTGAGCTAAC TAACGTGATC GTCCTATCTG GAAATGAGGC CATACACCTA
ACTGATAGTA AGAAGCATCT CACTAATTAC CTTCGTAAGC GGCCTAACTT CGATATTCTA
AAACTGCTAC TAAGCAATAA GACTGTACTC GTTGAAGGCA CTACCGAAGA GATGCTGATC
AACGCCATCC TCTACCGTAA TAACAAGAAT TTGAGTAGTC TTGAAGTAAT ATCTATCGAG
CAAACTGGCT TCATAACTTT CATGGACGTC TGGTTGCAAG TCAATAAAGG TAAACCAAAG
AAGAAGCTAA GCATCATACG TGATTATGAT GATAATAATG CGACCAAAGA CAAGCACCAA
AAATACGATA TCGAAAACGA CAATATAAGA GTAAGAACCA CTACCCAATA TACGCTCGAA
GACGATCTAG CTGGAACCGC TGGAAACCTT CATCGCCTAA ACACACTGTT CAACAAGAAG
TGCAAAACCC CGGAAGAGAT GGCCAAGTTC CTGAAAAATA GTAAAGCCGA AAGGATGCTC
AAGATTGCAG ACTCTATCTT AGATGAAATG AACAAAGATC CAATCATGCT ACCCAAGCAC
ATTCAAGAAG CCTTGGACTT CATGAAATGA
|
|---|
| Protein sequence | MYIRTVEIEN YRAFKSFKIK LSPLSLIIGE NEAGKTNLFD ALALPLNSND ISFNKKRLSV
SDINREAIKD FYQAIINGKG DDEIKALIPK VRVEVEFTDP KNFIEEGVIG KWIIGEEADE
SYKIRYDFRP KDADHFVKSA KELLDGIEDI KETRWFNLPI ELYDYDVTQS NNGLKVSYSD
LRLIAINSIN AERDDFAENN TQKSNNILTK MLISALEDSD KAKINSAYTS FFDEIESTET
FKKIVTPDPD FENFFDEIVD KLECIPNLPN LKSILSNITL KSGESYLYQR GLGYRNLVFI
YLLFEFFKGN KNALNLCCIE EPEAHLSVNN LRFATDFIYK STQKGGSSLQ TLISSHSPQV
INKLELTNVI VLSGNEAIHL TDSKKHLTNY LRKRPNFDIL KLLLSNKTVL VEGTTEEMLI
NAILYRNNKN LSSLEVISIE QTGFITFMDV WLQVNKGKPK KKLSIIRDYD DNNATKDKHQ
KYDIENDNIR VRTTTQYTLE DDLAGTAGNL HRLNTLFNKK CKTPEEMAKF LKNSKAERML
KIADSILDEM NKDPIMLPKH IQEALDFMK
|
|---|
| |