| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1861 |
|---|
| Symbol | |
|---|
| ID | 5371965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 2219983 |
|---|
| End bp | 2221251 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640830064 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001366067 |
|---|
| Protein GI | 153000386 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00488759 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAGG TGATGACAGC AACAGGCGTA GAGCAAGGCA AGTTAAACGA TGCGGTATTG
CGCCGTTGGT TGCGGGCAGG GGTAACGCGG GACTTTCGGG ACACGCAGTT TCCGGCGGTG
CGGTTACGGG CCTCGACCGA TAGACGCCAA GCCTCAGTGT ATTTAGTGAT GAACGAAGCG
GGCAAAACCG TGTGGCAAAA GCAGGGTGTG TGGCCAGTGA TGTGCTTGAA GACCTTTTTA
ACCGAGTTAC CCAGCTTGCT CGCCAAACGC AGCATGGGCC AAACGGTCAT CAGCAACGAG
TTTGCCACGG TAGCGCAATT ACTGGCGTGG TTTGTCACCC ATGTGGAGTG CAACCGTACC
TTAAGCAACA GCTGGCGCAG TAACTGTAAA TCGTTGGTGA GTAAACATCT CCGTGGCTGC
TTTGGTGAGT TACCGCTCAA TGAGCTGAAC TTTATCGCGG TGGACAGTTA CTTAATCAAA
CCCATGTTGG CGCAGGGCTA TTCGGCCAAT TACATCAAAG CGGCGGTGAA AGTGTTAAAG
CGGGCGTTAT CGGTTGCGGC CGATTTACGG GTGTTAGACA CCAATAGCTT GGCGGGGTAT
CGGGTGCAAA TGAGTTTGAA GATGCCGCCT TTGGTGGGTA CACAATTAAG CGAGTCGGAC
GTGGGCCCGT TATTTAGCGC CCTACGGAAT GCAGCAAGAC CGGTAGCGAT GTTGTTTGTG
CTAATGCTGA TGTTCGGTAC CCGCATAGGT GAAACCCGTT TAGCCAGATG GGACCACTTT
GCCGGCGATT ACTGGTTTAT TCCGGCTGAG AATGCCAAGA ACCGCCAAGA GCACCGACTG
CCCATGACGC CGACAGCCAA GAAGCTGATT ACCCATTACG CCCTGTGGCA ATACACCCAT
GTGGGCAAGC GAGCGTTTTT GTTCCCAGGC GAAGTAGGGC CGGTGAGCAT TCGCACCGCG
CAGTATTGGA GTGAGACGAT TCGGTTTAAG GCGTTTACAT CGCATGCACT GCGCAAACTG
TGCCGCACCA TTATTGCCGA CATGGGCGTA GATACTATGG TAGGTGAGCG GATTTTGAAT
CACACCTTGC CGCTACTGCT GCGCACTTAC GTCAACAGCA CCTTAGATAA GGGCATGTTG
ATGGCGTTGG ATGCCTACCA TGCACACTTA ATCACGTTGG GGTTTGATGA TGTGGCGCCC
GAGATTATGC GCCAATCGAC CGCTGAGCCG AGTGAGCCAG ATGAGCCAAT GTTAGTGGGG
TGGTTATGA
|
|---|
| Protein sequence | MAQVMTATGV EQGKLNDAVL RRWLRAGVTR DFRDTQFPAV RLRASTDRRQ ASVYLVMNEA
GKTVWQKQGV WPVMCLKTFL TELPSLLAKR SMGQTVISNE FATVAQLLAW FVTHVECNRT
LSNSWRSNCK SLVSKHLRGC FGELPLNELN FIAVDSYLIK PMLAQGYSAN YIKAAVKVLK
RALSVAADLR VLDTNSLAGY RVQMSLKMPP LVGTQLSESD VGPLFSALRN AARPVAMLFV
LMLMFGTRIG ETRLARWDHF AGDYWFIPAE NAKNRQEHRL PMTPTAKKLI THYALWQYTH
VGKRAFLFPG EVGPVSIRTA QYWSETIRFK AFTSHALRKL CRTIIADMGV DTMVGERILN
HTLPLLLRTY VNSTLDKGML MALDAYHAHL ITLGFDDVAP EIMRQSTAEP SEPDEPMLVG
WL
|
|---|
| |