Gene Shew185_1620 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1620 
Symbol 
ID5371150 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp1960992 
End bp1962203 
Gene Length1212 bp 
Protein Length403 aa 
Translation table11 
GC content43% 
IMG OID640829820 
Productporin 
Protein accessionYP_001365830 
Protein GI153000149 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.07941e-10 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAAGA CGTTAGTAGC AACTGCGCTT GCAGCAATTT TTTTAGTACC ATCAGTCTCG 
GCTATCGAGA TCTATAAAGA TAATAAAAAT GCCGTAGAAA TCGGTGGTTT TATTGATGCA
CGCGTGATCA ACACTCAAGG GGAAACTGAG GTTGTTAACG GCGCATCTCG CATTAATTTT
GGTTTTAATC GTGAGTTGAC TGACGGTTGG AAAGCCTTTG CTAAATTAGA GTGGGGCGTA
AACCCAGTTG GTAGCAGCGA TATCGTCTAT AACAATCGCT TCGAATCTGT TCAAGAAGAG
TTCTTCTATA ACCGTTTAGG TTACGCAGGT CTGTCCCATG ACACTTATGG AACACTGACT
ATCGGTAAGC AGTGGGGTGC TTGGTACGAT GTCGTTTACA ACACTAACTA CGGTTTTGTG
TGGGACGGCA ACACTGCAGG TGTTTACACT TATAACAAAG ATGACGGCGC GGTAAACGGC
GTGGGTCGTG GTGATAAAAC GGTCCAGTAT CGCAACGCCT TTGGCGATGT TAGCTTCGCA
GTTCAAGCGC AGTTGAAAAA CAGCAGCTTC TATACTTGTG ATACCACCGA TGATATTACT
CAAGCTCAGT GTCAAGCGAA CTGGGAAAGT GGTGATAAAG CGGCTCAACA AGTTGAGTAC
AACTACACTT ATGGTGGCGC GCTGACCTAT AAAGTCACAG ATATGTTGAC TCTAACTGCG
GGTGTTAACC GTGGTGAGTT TGATGTGAGT TTTGGTAACG GCGAACAAAC CACAGCGGTT
GATCTTATCT ACGGTGCAGG TATCACTTGG GGTAACTTCG ATAACGATGG TTTATATGCT
GCTGCAAACG TTAACAGACA AGAAAACCAT GACACTGACA ACATTGGTCG TTTGATCAAA
GATGCCTATG GTATTGAAAG TTTAGTTTCT TACAAGTTTG ACAATGGCCT ACGTCCATTC
ATTTCTTACA ACGTGCTTGA TGCCGGTAAA GATTATGTTA TTCAGCCTAA CTTCAATGCT
GATCCTAACG ATGAATTCAA ACGTCAGTTC TTAGTTGTCG GTTTACACTT TGTATGGGAC
CCAAATACAG TTCTGTACAT AGAAGCACGT AAAGATTACA GCGATTTCAC CAGCGCAGAT
AAAGACCAAG AAGCCAGAAT GGCACTTTCT GAATCTGATG GCGTAGCAAT CGGTATCCGT
TACACACTCT AA
 
Protein sequence
MNKTLVATAL AAIFLVPSVS AIEIYKDNKN AVEIGGFIDA RVINTQGETE VVNGASRINF 
GFNRELTDGW KAFAKLEWGV NPVGSSDIVY NNRFESVQEE FFYNRLGYAG LSHDTYGTLT
IGKQWGAWYD VVYNTNYGFV WDGNTAGVYT YNKDDGAVNG VGRGDKTVQY RNAFGDVSFA
VQAQLKNSSF YTCDTTDDIT QAQCQANWES GDKAAQQVEY NYTYGGALTY KVTDMLTLTA
GVNRGEFDVS FGNGEQTTAV DLIYGAGITW GNFDNDGLYA AANVNRQENH DTDNIGRLIK
DAYGIESLVS YKFDNGLRPF ISYNVLDAGK DYVIQPNFNA DPNDEFKRQF LVVGLHFVWD
PNTVLYIEAR KDYSDFTSAD KDQEARMALS ESDGVAIGIR YTL