Gene Shew185_1580 details

Gene Information

• Locus tag: Shew185_1580
• ID: 5373705
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: -
• Start bp: 1912183
• End bp: 1914102
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640829776
• Product: decaheme cytochrome c MtrF
• Protein accession: YP_001365790
• Protein GI: 153000109
• TIGRFAM ID: [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.0766819
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAAGT TTGCAAAAAT GAGCACTCAA TTCAGTCTGA TGCTGGCCTT AGTCTCGCTA 
TTAAGCGCCT GTGGCGGTGA TAAGGGCCAA GATGGTAATC CCGGTGAACC CGCAAAACCA 
CCCGCATTAA CCATCACTAG CCTAAAGGTC ATGATCGATA AAGTTGCGGT GGCAGATGGC 
ATTGCTCAAG TGGATTTTCA AGTGAGCAAT CAAGATGATG AAGCCGTCAT TGGTATCCCA 
TCGGCAACAT TTATTGCAGC GCAGCTTCTC CCCCAAGGCT ATACAGGCGC GGGAAATAGC 
AGTGAATGGC AACATTTTAC AGCTGAAACC TGCGCGGCAA CTTGCCCAGG CAGTCTCACT 
GATCATAAAA ACGGTCACTA CAGCTACACC TTCAGCGCGC CGTTTAATGG CATGAATGGG 
GTGACGTTTA TGCCTGAAGC GACCCAAAGA ATGGTGGTCA AAATCGGCGG TGATAAACTT 
GCTGATAACA CCCCCTTACC TATTACCAAT CAACATTATG ACTGGCAATC ATCTGGGGAT 
AATGTCGCTT ACACCCGCAA CTTAGTCACA ATAGAAACCT GTAATAGTTG CCACAGTAAT 
CTTGCTTTCC ATGGTAGTAA ATATAATCAA ATCGAAACCT GCGTCACCTG TCATAACAGC 
AAAAAAGTCA GTAACCCTGC GGATATTTTC CCGCAAATGA TCCACAGCAA GCATTTAACC 
GGTTTCCCGC AACCCATTAG TGACTGCCAA ACCTGTCATG TCGATAAGGC AGAGTTAGCT 
GAGCAGCAAA ACTGGCACAG AGTCCCAACC ATGCAAGCCT GCGGCGCCTG TCATACACAA 
ATTAATTTTC CCGCAGGCGA AGGACACCCA GTGCAGGCTG ATAACAGTAA CTGCGTGGCG 
TGCCATAATG CCGACTGGAC CGCAAACGTT CACAGTGATG AAGACAAAAC CGCGGCACTG 
ATGCAATTTA GTCCTAGTAT CACCAGCGCC AGTATGGATG CCAATGGTAC AGTCACCGTC 
GCGGTTAAAT TGATGAACCC AGCCACAGGC TCCGTCTACA GCGACAGTGC CGATAAGCTA 
AAATTCATCA ATGATTTAAG GGTCTATGCC AACTGGGGAA CCAGTTTTGA TTATACCACC 
CGCTCTGCCC GCTCGATTAA GCTGCCGGAA TCCACCCCAG TGTCAGGCTC AAATGGCATT 
TATACCTATA CGATTTCGGG CCTTACTGTG CCTGCGGGCA CTGAAGCAGA TAATGGCGGA 
CTCGCGATTC AAGGCCGAGT CTGCGCTAAA GACAAAGTAC TCGTTGATTG CACCACTGAA 
CTGGCGGAAG TGTTAGTGAT TAAAGCCAGC CACAGTTATT TTGATATGGC AGCATTAAGC 
AGTACGGGTC GCCGCACTGT TGTCAGTAAT GCAAGCTGCG GTAATTGCCA TGGCGATCAA 
AAGCTTAATA TCCATGGCTC ACGTAACGAT CTCGGTGGTC AATGTCAACT ATGTCATAAC 
GCCAATATGC TGGCTGATGC GACGGCGGCA AATCCTTCCA CCACGTCATT TGACTTTAAG 
CAGCTGATCC ACGGTATTCA CACCAGCCAA TTCGCAGGTT TTGAAAACCT AAACTACCCA 
GGAAAAATCG GTAACTGTGC CCAATGCCAT GTTAACGATT CCGCGGGGAT ATCTACCGTC 
GCCCTTCCTT TAAATTCAGC AGTACAACCC CTTGCCCTCG ATAACGGCAC TTTTACCAGC 
CCGATTGCCG CTGTGTGTAG CAACTGCCAT TCAGATACCA GCACTCATAA CCACATGGCT 
CAGCAAGGTG CTGTTTTTGC TGGCACAAAA GCTGATGCAA CCGCAGGAAC TGAAACCTGT 
GCTTTCTGTC ATGGACAAGG CGGAGTCGCG GACGTGTTAA AAGTGCATCC CATAAACTAA 

 

Protein sequence

MNKFAKMSTQ FSLMLALVSL LSACGGDKGQ DGNPGEPAKP PALTITSLKV MIDKVAVADG 
IAQVDFQVSN QDDEAVIGIP SATFIAAQLL PQGYTGAGNS SEWQHFTAET CAATCPGSLT 
DHKNGHYSYT FSAPFNGMNG VTFMPEATQR MVVKIGGDKL ADNTPLPITN QHYDWQSSGD 
NVAYTRNLVT IETCNSCHSN LAFHGSKYNQ IETCVTCHNS KKVSNPADIF PQMIHSKHLT 
GFPQPISDCQ TCHVDKAELA EQQNWHRVPT MQACGACHTQ INFPAGEGHP VQADNSNCVA 
CHNADWTANV HSDEDKTAAL MQFSPSITSA SMDANGTVTV AVKLMNPATG SVYSDSADKL 
KFINDLRVYA NWGTSFDYTT RSARSIKLPE STPVSGSNGI YTYTISGLTV PAGTEADNGG 
LAIQGRVCAK DKVLVDCTTE LAEVLVIKAS HSYFDMAALS STGRRTVVSN ASCGNCHGDQ 
KLNIHGSRND LGGQCQLCHN ANMLADATAA NPSTTSFDFK QLIHGIHTSQ FAGFENLNYP 
GKIGNCAQCH VNDSAGISTV ALPLNSAVQP LALDNGTFTS PIAAVCSNCH SDTSTHNHMA 
QQGAVFAGTK ADATAGTETC AFCHGQGGVA DVLKVHPIN