Gene Shew185_1551 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1551 
Symbol 
ID5371449 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp1874962 
End bp1876581 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content49% 
IMG OID640829747 
Productamino acid/peptide transporter 
Protein accessionYP_001365761 
Protein GI153000080 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3104] Dipeptide/tripeptide permease 
TIGRFAM ID[TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCAACAG AACAACATCC GCCACACGCT ATGCAAGGCC TACAGGGTTC GCCCCCGCCC 
GAAATGCTCT TTGGGCATCC TAAGGGCTTG TTTGTCTGCT TTTTTACCGA AATGTGGGAA
CGCTTTTCCT TCTACGGCAT GAAGGCGTTA CTGTTTCTTT ATCTGATTAA ATATCACCTG
TTTACCGACG AATTTGGCTA TAACGTCATT GGTGCTTATG GTGCCTTAGT GTACGCCATG
CCCGTGGTCG GTGGTTTATT GGCCGACCGC TATATCGGCA TGCGTAAAGC GGTGATCTTC
GGTGGTATTT TGTTGGTCCT CGGCCACTTA GGCATGGCCT TTGAAGGCCA TCAAGCGGTC
ATCGTCGCCG GTGAAGTTCA GCGCGATGAA CAAGCACTGC AGGTGTTCTA TCTATCCCTC
GCCTTGATCA TTGTCGGTGT GGGCTTTTTA AAACCTAACA TTTCAACCAT AGTCGGTCAG
CTGTATCCCG AGTCATCTCC AAAGCGGGAT TCAGGCTTTA CCATTTTCTA CGCTGGCATC
AATTTAGGCG CCACCTTAGC ACCGTTGATT TGTGCTTATT TAGGTGAAAC CTATGGCTGG
AAGTACGGCT TTGGTTTGGC AGGTTTAGGC ATGTTAGCGG GGTTGTTGGT GTTTATTCGG
GGTAAGAAAC ACCTGCAAGG TTTCGCCGAA CCCAGAGATC CCGCAAGAAT TTTAAAGAAA
ACCGCCGGCA TCACCACAGA GCAATGGATT TATTTAAGCG CCATCGGCAG CGTAGTGCTG
GTCTGGGGCT TAATTCAAAC CCACTCCCTT GTGCTTTCTA TTAGCAGTTT ATTACCCGCT
GTGAGTCCAG TTATTTGGTT CTTGCACTCA GTATCTCTGG TGCTCGCCCT CGGGATAGGC
TGGTTTATGG TGAAACACTG CAACCCGATT GAACGTCAAC AGATGTCGGC CTTACTGCTG
TTCATCGTCG CAGGTTTGGT CTTCTTCGGC TTATATGAGC AAACCTACGG TTCTTGGGTA
GCATTTTCGG ACCGCGTGAT GGACCGCAAC ATGCTCGGCC TCCAATGGAG CGCGGGACAG
TTAACCTTCC TCGGCGCCTT CTTTGTGATC AGTTTATCGC CCATCTTTGC TTGGCTATGG
CCTGCCCTCG CCCGTAAACA TTGCGATCCG AGCAAACCGG TTAAAACCGC ACTCGGCATT
TTATTCGCAG GTTTATCCTT TATGGTGCTA GTACTCGGGA TCCAAATGCC GCTAAGCAGT
GGCTTAGTGA GTATTTGGTT TTTAGTCGCG GCTTATTTTG TATTGGAAAT CGGCGAGTTA
TTGCTGTCGC CCATTGGCTT ATCTGCTGTA ACTCAGCTGT CGGTAAAACG CGTGGTCAGC
CTGATGATGG GCGCTTGGTT CCTCGGTACT TCATACTCTG AAATCTTAGC CGCCGAATTA
AACAAGCTCG CCGCGATTGA TACCCAAGGC GGCGTAATAA GTGACGTACC GAGTGCGATG
GCGCTATATG AGCAACTGTT TATCTTCTCG GCGCAAATTG GCGTGGTAAT GGCGTTAGTC
TTCTTTGCCC TTGCGCCATT AATGAAGAAA ATGATGCACG AAAAAACAGC AACAAGTTAA
 
Protein sequence
MSTEQHPPHA MQGLQGSPPP EMLFGHPKGL FVCFFTEMWE RFSFYGMKAL LFLYLIKYHL 
FTDEFGYNVI GAYGALVYAM PVVGGLLADR YIGMRKAVIF GGILLVLGHL GMAFEGHQAV
IVAGEVQRDE QALQVFYLSL ALIIVGVGFL KPNISTIVGQ LYPESSPKRD SGFTIFYAGI
NLGATLAPLI CAYLGETYGW KYGFGLAGLG MLAGLLVFIR GKKHLQGFAE PRDPARILKK
TAGITTEQWI YLSAIGSVVL VWGLIQTHSL VLSISSLLPA VSPVIWFLHS VSLVLALGIG
WFMVKHCNPI ERQQMSALLL FIVAGLVFFG LYEQTYGSWV AFSDRVMDRN MLGLQWSAGQ
LTFLGAFFVI SLSPIFAWLW PALARKHCDP SKPVKTALGI LFAGLSFMVL VLGIQMPLSS
GLVSIWFLVA AYFVLEIGEL LLSPIGLSAV TQLSVKRVVS LMMGAWFLGT SYSEILAAEL
NKLAAIDTQG GVISDVPSAM ALYEQLFIFS AQIGVVMALV FFALAPLMKK MMHEKTATS