Gene Shew185_1488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1488 
Symbol 
ID5371518 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp1797097 
End bp1798038 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content46% 
IMG OID640829687 
Producthomoserine O-succinyltransferase 
Protein accessionYP_001365701 
Protein GI153000020 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1897] Homoserine trans-succinylase 
TIGRFAM ID[TIGR01001] homoserine O-succinyltransferase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.256727 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGGTTA GAATTCCAGA TCATCTGCCC GCAGCAGAAG TGTTAGAGTC AGAAAATATT 
TTCGTTATGT CCGAGACGCG GGCGGCTAAT CAAGATATCA GGCCGATGAA GGTGCTGATT
TTGAACTTGA TGCCGAACAA AATCGAGACA GAAACCCAGT TACTGCGCTT ACTGGGCAAC
ACGCCTTTAC AAGTCGATGT GGATTTATTG CGCATTCACG ACAAAGAATC CAAGCATACT
TCCATCGATC ACATGAATAC TTTCTACCGT GACTTTGAAG CCGTGCGCCA TAAAAATTAC
GACGGCCTTA TCATCACAGG TGCGCCGCTT GGGCAAATCG ATTTCGAAGA TGTAGTTTAT
TGGGATCATA TCCGTGAAAT CATCGACTGG TCCCAAGAGC ATGTCACCTC AGTGTTGTTT
TTATGCTGGG CAGCCCATGC GGGTTTATAT CATCTCTATG GTTTAAATCG AAAAATATTG
CAACAGAAGC GTTCAGGCGT ATTCGTGCAT CGCCGTACCT CTCAGCATTT CCCGTTACTG
CGCGGTTTTG ATGATGAATT TTTTGCACCC CATTCCCGTT TTGCCGAAAT GGATGTCGAA
GAAATTAGAC AACATCCACA GCTGCAGCTA TTGGCCGAGT CCGATGAGGC AGGGGCTTAT
TTGGTGTTAA GTCGGAATAA TCGTAACTTG TTTGTGATGG GTCATCCTGA ATATCAAAAG
TCGACCTTAA ACGAGGAATA TCAGCGAGAC TTAAGCCAAG GTTTAGACCC GAATGTGCCG
CAGAATTATT ATCGCAATGA TGATCCTAAA GCCGACGCCA TTGCCCGCTG GCACAGCCAC
GGTAGCCTGC TGGTAAGTAA TTGGCTTAAT TATTACGTCT ATCAGTTAAC CCCTTACGAC
TTAAGCGATA TGACGGCGAT GACACCGTGG GAGTCGCGTT AA
 
Protein sequence
MPVRIPDHLP AAEVLESENI FVMSETRAAN QDIRPMKVLI LNLMPNKIET ETQLLRLLGN 
TPLQVDVDLL RIHDKESKHT SIDHMNTFYR DFEAVRHKNY DGLIITGAPL GQIDFEDVVY
WDHIREIIDW SQEHVTSVLF LCWAAHAGLY HLYGLNRKIL QQKRSGVFVH RRTSQHFPLL
RGFDDEFFAP HSRFAEMDVE EIRQHPQLQL LAESDEAGAY LVLSRNNRNL FVMGHPEYQK
STLNEEYQRD LSQGLDPNVP QNYYRNDDPK ADAIARWHSH GSLLVSNWLN YYVYQLTPYD
LSDMTAMTPW ESR