| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1288 |
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| Symbol | |
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| ID | 5370354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | + |
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| Start bp | 1532131 |
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| End bp | 1533795 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640829486 |
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| Product | carotenoid oxygenase |
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| Protein accession | YP_001365501 |
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| Protein GI | 152999820 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.528505 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATAGAC GTCAATTTCT AGCAGGCTCA GCCGCCCTAA TGACGACCGC TGTTTGGGCG
AGTTCAGTGG ATAAATTACT GGCGCTGGAT AACGCACAAG CGGTCGCCCG TGAGCCATGG
GCCATAGGTT TTAGCGGGGC GGAAGGCGAC TATCAGCCAC TCACTATGCA GGTTTCGGGC
GAATGGCCTG CACAATTGAG CGGCAATCTA TATCGTAATG GGCCTGCAAA AATGTCTCGG
GCAGGTAAGG CATATCAGCA TTGGTTCGAT GGCGATGGCA TGGTGCAGCA GTTTAGTGTG
GCTAATGGGC AAATTCAGCA TCAGGCTAAG TTTATCCAAA CAAAGAAGTT TAAAGTGGAA
GAAGCCGCTG GCGCATTTAA GTACACCACC GCAGGCACAG TGATCCCCAA TGCTTTACCC
ATTCGCAATA ACGATGACTT GAATGTGGCT AACACCAGTT TATTACCGCG CCACGGCGAG
TTGCTTGCCT TGTGGGAAGC GGGTTCACCC TATCGACTCG ATGCGCAGAC CTTAACCACG
CTCGGCGTTA AAAGCTTTGG CGACAAGTTT AAGGGTTTAC CCTTTTCCGC CCATCCACTC
GATGATGGAC AAGGTGGATT GTGGAATTTT GGCGTCTGGT ATGTCGGCGG CGAGAAGCTA
TTACTTGTGT ATCAAGTGGC AGCCGATGAC AGCATTGCCA GAATGGAAGT GATTGAATTA
CCACAGGCGA GTTATTTACA TGCCTTTGCG CAGAGTGAGA ATAAGCTAGT GTTTTATATT
TCATCTTGCG TGTATGAAGA GGGCGAAACT TATATCGATG CCTTTAAATG GCGACCCGAA
TTGCCATCGC AATTACTGGT TATCGACAAA GCCGACTTTA AAGCGCGCCA GTTACACCAA
CTGCCCGCAG GATTTGTGTT TCACTTTGGC CAAGCCATTG AGAAGAATGG CGAACTGTCA
GTCCAGCTTT GTCTCTATCC CAATTCGGCG ATTTTAACGC AAGGGATGAA GGGGTTACTG
ACGGGCGCCC GTAAAGCAAA AACACCCCAT GCCGAGTTAG TGACGATCAC AGTACCGCTG
ACGGCACCAC TTACAGCAGC TAGCAAAACG CAGTTTGCGG GGACGTTATC TCCCTCTGCA
CGTATTAACC GCAGCGGCGT GATGATGGAG TTTCCCCAGT TTGCGCAGCA CACTATGAGT
AACAAAGAGT CTGCACAGCA AACGAGCAAT GCCGAAAAGC TTGCAGAGAG AACGGGTGGA
GCTTCGGAGT TTGTCCCGTT ATTTGGCGTT GGAGCAAGAT CAGATTCTGC TGCTAGTTCT
GGTTCTAACT TTAACTATGA AGCCGAATCT GAATCAGGAC TGAGTAATAC TCTGTATTGT
ATTCATAATA CAAAAGACAG CAGCCAGCAC GGTGCGGATA CACTTGGCGA CGCGAGCTAT
AGCGCGTTTT ATCTTGGCAA AAGCAAGATT GCCGAAGAGC CGCTCTATAT CCCCGCCACT
GAGCAGCATG AAGCCTATTT GTTGATGACT TGGCTCGATT ACCACAATGC ACAGTCTGGT
TTGTCTTTGT TTCGTGCCAG TGACATCAGT GCGGGCCCCA TCGCTTCGGC TCAGATGAAC
AGGGTATTGC CATTAGGGTT TCACGGTTGT TTCATTAACG CTTAA
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| Protein sequence | MDRRQFLAGS AALMTTAVWA SSVDKLLALD NAQAVAREPW AIGFSGAEGD YQPLTMQVSG
EWPAQLSGNL YRNGPAKMSR AGKAYQHWFD GDGMVQQFSV ANGQIQHQAK FIQTKKFKVE
EAAGAFKYTT AGTVIPNALP IRNNDDLNVA NTSLLPRHGE LLALWEAGSP YRLDAQTLTT
LGVKSFGDKF KGLPFSAHPL DDGQGGLWNF GVWYVGGEKL LLVYQVAADD SIARMEVIEL
PQASYLHAFA QSENKLVFYI SSCVYEEGET YIDAFKWRPE LPSQLLVIDK ADFKARQLHQ
LPAGFVFHFG QAIEKNGELS VQLCLYPNSA ILTQGMKGLL TGARKAKTPH AELVTITVPL
TAPLTAASKT QFAGTLSPSA RINRSGVMME FPQFAQHTMS NKESAQQTSN AEKLAERTGG
ASEFVPLFGV GARSDSAASS GSNFNYEAES ESGLSNTLYC IHNTKDSSQH GADTLGDASY
SAFYLGKSKI AEEPLYIPAT EQHEAYLLMT WLDYHNAQSG LSLFRASDIS AGPIASAQMN
RVLPLGFHGC FINA
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