Gene Shew185_1285 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1285 
Symbol 
ID5371497 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp1529566 
End bp1530216 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content48% 
IMG OID640829483 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001365498 
Protein GI152999817 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.000337392 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATGC AAAACAACAT CATCAGTGTC GGCTTAGTAG AAGATCAACA ATTGGTTCGC 
CAAGGGATCG CTAGCCTGCT CGCTATTTCC GACAACATTC GCGTGGTGTG GCAAGCCGAA
GACGGCCAAG ATGCACTCAG CCAACTCGCC AATAATCCTG TCGATGTGCT ACTCAGTGAT
ATTCGCATGC CAAATCTTGA TGGCATCGCC ATGCTCAAAC AGATACGTCA GAGTGCCAAT
CGCTTACCTG TCATCATGTT AACCACCTTC GACGACAGTG AGTTATTCCT CAATAGTTTG
CAGGCGGGAG CCAACGGCTT TTTACTCAAG GACGTGTCAC TCGATAAGTT ACTGCACGCC
ATCGAAACCG TCGCCAAAGG CGGCTACTTG ATAGAGCCTT CGGTACTCAA ACAGATGAGT
GAGCCTAAAC CTGCACCTAG CGTTGGGGTA ACTAGAAATG AATTATTGTC GGAACGGGAG
CGGGAAATCC TCAGTTTTAT GGCAGGCGGA TTCTCCAATA AGGAGATCGC CAATGCGGTA
TTTTTAGCCG AGGGCACAGT GAAAAATCAT GTCTCTAACA TACTCACTAA ACTCGATTGC
CGAGACCGCA CCCAAGCGGT ACTCAAAGGC TTACAACTAG CGTTGATTTA A
 
Protein sequence
MDMQNNIISV GLVEDQQLVR QGIASLLAIS DNIRVVWQAE DGQDALSQLA NNPVDVLLSD 
IRMPNLDGIA MLKQIRQSAN RLPVIMLTTF DDSELFLNSL QAGANGFLLK DVSLDKLLHA
IETVAKGGYL IEPSVLKQMS EPKPAPSVGV TRNELLSERE REILSFMAGG FSNKEIANAV
FLAEGTVKNH VSNILTKLDC RDRTQAVLKG LQLALI