Gene Shew185_1242 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1242 
Symbol 
ID5372470 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand+ 
Start bp1482624 
End bp1483097 
Gene Length474 bp 
Protein Length157 aa 
Translation table11 
GC content49% 
IMG OID640829441 
Productpositive regulator of sigma E, RseC/MucC 
Protein accessionYP_001365456 
Protein GI152999775 
COG category[T] Signal transduction mechanisms 
COG ID[COG3086] Positive regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.000737615 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGGAAG AAATTGCCCG AGTCGTCGCC AGTGATAGCC AAGGCTGGTT GACGGTTGAA 
GTCGAACTTA AGAGTACCTG CAAGAGCTGC AGTAACAGTG AGTCTTGCGG GACTTCTGCT 
GTTGCTCAGG CTTTTTCCTC GAAAACCCAG CAATTTTCGA TTCAGAGTGA GCGCCGCTGC 
GAGGCGGGTG AGTTACTCAA ACTAGGACTT CCCGAGAGCG TAATCCTCAA AGCTGCGGCA 
TTAATCTATT TAATGCCGCT GTTTGGTTTG TTTGTTGGCG CTGCGTTAGG CCAATTTTTA 
GGCCAGTTGC TTGAGTTTAA TCCTAACCTA GGTGCCATGG GCTTTGCGGC CGTTGGTGCC 
TTGCTTGCGT GGTCTTTTGG TAAGCAACAG GCCAAACGCT TAGAAGTCGA TGCTCAACCT 
GTGATTTTGG CCTATTTGGG CATGAGCATC AATTTACAAG AATTAGCTCA ATAA
 
Protein sequence
MMEEIARVVA SDSQGWLTVE VELKSTCKSC SNSESCGTSA VAQAFSSKTQ QFSIQSERRC 
EAGELLKLGL PESVILKAAA LIYLMPLFGL FVGAALGQFL GQLLEFNPNL GAMGFAAVGA 
LLAWSFGKQQ AKRLEVDAQP VILAYLGMSI NLQELAQ