| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1188 |
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| Symbol | |
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| ID | 5373819 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella baltica OS185 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009665 |
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| Strand | - |
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| Start bp | 1425214 |
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| End bp | 1427097 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640829387 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001365402 |
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| Protein GI | 152999721 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.438947 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAAGTG TCCGTCGTTG TAACAGTTTC CCAACTTGGA TGATATCTAT GGATCATACT
CCGCAGTCGC AACTTAAGCT GTTGCTTGCC AAAGGTAAAG AGCAAGGTTA CTTAACCTAT
GCAGAAGTGA ACGATCACTT ACCTGCAGAC ATGGTCGATT CTGACCAGAT CGAAGATATT
ATCCAGATGA TAAATGACAT GGGTATCCGG GTGTTCGAAG AAGCCCCTGA TGCCGATGAC
ATGATGATGT CGGAAGACAA CACAGACGAA GATGCCGCTG AAGAAGCCGC TGCCGCACTG
GCAACAGTAG AAAGCGAACT TGGCCGCACA ACCGATCCCG TGCGCATGTA CATGCGTGAA
ATGGGTACCG TTGAGCTTCT GACCCGCGAA GGCGAAATTG TTATCGCCAA ACGCATCGAA
GAAGGCATCA ACACAGTTCA AAGTTCAGTC GCCGAATACC CACAAGCGAT CGCTATGATC
CTTGAGCAAT TCGACCAATT TGAAGCCGAC GAACTGCGCT TATCTGATAT TATCTCTGGA
TTTGTTAACC CTGACGAAGA CGTTGCACCG ACCGCCACTC ACATCGGCTC AGAATTATCT
GAAGAAGAGC TGGAAGATGA AGATGACGAA GAAGATGACG ACGACACTGA AGATGAAGAA
GAAGGCAACA AAGGGCCAGA TCCTGAAGAA GCACGCGAAA GATTCGGTCA ACTGAGAACA
GCCTACGAAA GTGCACTGAA AATTATCGAA GCTAAGGGCC GTGAACACCC TGAATCGGTA
AAAGCGCTAT TCGAAATCGG TGAAATCTTC AAAGAATTCC GCTTAGTACC TAAACAGTTT
GACCGTTTAG TGAAAAGCAT GCGCACTATG ATGGATCGCG TACGTGTTCA AGAACGTTTA
GTGTTAAAAC TGTGCGTTGA ACAAGCCAAA ATGCCGAAGA AAAACTTCGT CAAACTCTTC
ACAGGCAACG AAACCAACCT CGATTGGTTC AACACTGAGA AAGCCTCAAC TAAACCTTAT
GCCGAAGGCC TAAGAATGGT TGAAGACGAC GTGATCCGTT GTCGCACCAA GCTTGCTGCA
GTTGAAGAAG AAACCGGCTT AGCAATTTCT GCCATAAAAG ACATCAACCG TCGTATGTCA
ATCGGTGAAG CTAAAGCGCG CCGTGCGAAG AAAGAAATGG TTGAAGCCAA CTTACGTCTG
GTAATTTCTA TCGCGAAGAA ATACACCAAC CGTGGTCTGC AATTCTTGGA CTTAATCCAA
GAAGGTAACA TTGGCTTGAT GAAAGCCGTG GATAAATTCG AATACCGTCG TGGCTACAAG
TTCTCGACCT ATGCTACTTG GTGGATCCGT CAGGCGATTA CTCGTTCTAT TGCTGACCAA
GCGCGTACGA TCCGTATTCC AGTACACATG ATCGAAACGA TCAATAAGCT GAACCGTATC
TCTCGCCAAA TGCTACAGGA AATGGGCCGT GAGCCTTCAC CTGAAGAACT GGCTGAGCGT
ATGATGATGC CGGAAGATAA GATCCGTAAG GTACTGAAAA TCGCTAAAGA ACCTATCTCC
ATGGAAACCC CAATCGGTGA CGATGAAGAT TCGCATTTAG GTGATTTTAT CGAGGATACA
ACCCTCGAAC TACCACTGGA CTCAGCGACC AGCGAAAGCT TGAAAAACGC CACTCACGAA
GTGTTAGCAG GTCTAACCGC CCGTGAAGCG AAAGTATTGC GTATGCGTTT TGGTATCGAT
ATGAACACTG ACCACACTCT TGAAGAAGTG GGTAAGCAGT TCGACGTAAC CCGTGAACGT
ATTCGTCAGA TTGAAGCTAA GGCACTGCGC AAACTGCGTC ACCCTTCACG CTCAGAAATC
TTAAAATCAT TCCTAGATGA ATAG
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| Protein sequence | MLSVRRCNSF PTWMISMDHT PQSQLKLLLA KGKEQGYLTY AEVNDHLPAD MVDSDQIEDI
IQMINDMGIR VFEEAPDADD MMMSEDNTDE DAAEEAAAAL ATVESELGRT TDPVRMYMRE
MGTVELLTRE GEIVIAKRIE EGINTVQSSV AEYPQAIAMI LEQFDQFEAD ELRLSDIISG
FVNPDEDVAP TATHIGSELS EEELEDEDDE EDDDDTEDEE EGNKGPDPEE ARERFGQLRT
AYESALKIIE AKGREHPESV KALFEIGEIF KEFRLVPKQF DRLVKSMRTM MDRVRVQERL
VLKLCVEQAK MPKKNFVKLF TGNETNLDWF NTEKASTKPY AEGLRMVEDD VIRCRTKLAA
VEEETGLAIS AIKDINRRMS IGEAKARRAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ
EGNIGLMKAV DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLNRI
SRQMLQEMGR EPSPEELAER MMMPEDKIRK VLKIAKEPIS METPIGDDED SHLGDFIEDT
TLELPLDSAT SESLKNATHE VLAGLTAREA KVLRMRFGID MNTDHTLEEV GKQFDVTRER
IRQIEAKALR KLRHPSRSEI LKSFLDE
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