| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_1170 |
|---|
| Symbol | |
|---|
| ID | 5369721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 1395846 |
|---|
| End bp | 1397132 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640829369 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001365385 |
|---|
| Protein GI | 152999704 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000237219 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCCA TAGCTCACGC TGGATCATAT TATGCGGCAT CGGCCAACGA TAAGGTTGAA
CGTCCGCGCC TAGAGGAATC GATTGAAGCC GATGTTTGTG TGATTGGCGC GGGTTATACG
GGCCTTTCTG CTGCGCTACA TTTATTAGAA TCTGGCTTTA GTGTGGTGGT GTTAGAAGCC
GCTCGCATTG GCTGGGGCGC CTCGGGCCGT AATGGCGGAC AAATCGTCAA TAGTTTTAGC
CGTGACATTG ATACTATTGA AAAAACAGTC GGCAAAGAAC AAGGTAAACT CTTTGGCCAA
ATGGCCTTTG AGGGCGGAAA AATCATCCGC GATCGGATTG CTAAGTACAA CATTCAATGC
GATCTAAAAG ATGGCGGCGT GTTTGCCGCG ATGAACGAAA AACAAATGGG TCATCTGCGC
CATCAAAAGC AACTGTGGGA AAGCCACGGT CATGTGAATC AGCTCGAACT CCTCGATGCC
AAAGGCATTC GCGGTGTGGT AAATACTGAG CGCTATGTCG GTGGTCTGCT CGATAAAAGC
GGCGGCCATA TTCACCCACT TAACTTAGCT CTTGGCGAAG CGCGCGCGGT CGAATCCCTC
GGCGGTAAGA TTTATGAAGA CTCAGCAGTG CTGAGTGTCG ACGAAGGCGA TAGCCCAGTT
GTGCATACGG CGCAGGGCAG TGTCAAAGCC AAGTTTGTGG TCGTGGCGGG TAACGCCTAT
TTAGGTAAGT TAATGCCAGA GCTGCAGGCG AAATCTATGC CCTGCGGCAC GCAAGTGATT
ACCACTGAGC CTTTGAGCGA CGATCTGGCG GCGAGCTTAT TACCGCAGGA TTACTGCGTC
GAAGACTGTA ACTATCTGCT CGATTATTTC CGTCTGTCTG GCGACAAGCG GATGATTTAC
GGCGGCGGCG TAGTGTATGG CGCTCGCGAT CCGGCGGATA TCAAGTCGAT CATTATTCCG
AACATGCTTA AAACCTTCCC GCAATTAAAA GATGTGAAGA TTGATTATGC GTGGACAGGT
AACTTTCTGC TGACGCTATC GCGCCTGCCA CAGGTCGGTC GTATCGGTAA GAACATCTAT
TATTCACAGG GTTGCAGTGG CCACGGTGTC ACTTATACCC ATCTGGCGGG CAAGTTACTG
GCCGAAATGC TCAACGGCCA AGCCACGCGC TTCGACGCCT TTGCTGCATT GCCACATTAT
CCATTCCCCG GTGGTCACGC ACTTCGCGTC CCTTTTAGTG CTATCGGAGC TTGGTATTAC
ACGTTAAGAG ACAAACTAGG TCTCTAA
|
|---|
| Protein sequence | MSAIAHAGSY YAASANDKVE RPRLEESIEA DVCVIGAGYT GLSAALHLLE SGFSVVVLEA
ARIGWGASGR NGGQIVNSFS RDIDTIEKTV GKEQGKLFGQ MAFEGGKIIR DRIAKYNIQC
DLKDGGVFAA MNEKQMGHLR HQKQLWESHG HVNQLELLDA KGIRGVVNTE RYVGGLLDKS
GGHIHPLNLA LGEARAVESL GGKIYEDSAV LSVDEGDSPV VHTAQGSVKA KFVVVAGNAY
LGKLMPELQA KSMPCGTQVI TTEPLSDDLA ASLLPQDYCV EDCNYLLDYF RLSGDKRMIY
GGGVVYGARD PADIKSIIIP NMLKTFPQLK DVKIDYAWTG NFLLTLSRLP QVGRIGKNIY
YSQGCSGHGV TYTHLAGKLL AEMLNGQATR FDAFAALPHY PFPGGHALRV PFSAIGAWYY
TLRDKLGL
|
|---|
| |