Gene Shew185_1166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1166 
Symbol 
ID5372591 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp1391453 
End bp1392553 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content44% 
IMG OID640829365 
Productextracellular solute-binding protein 
Protein accessionYP_001365381 
Protein GI152999700 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.90123e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCTAT TTAATAAGAT GACCACTCTA GCTCTGGTAA CTGCGAGCGT ATTAGCGAGC 
GCAGCGGCCC AAGCGGAAGA AGTGGTTCGC GTGTATAACT GGTCAGATTA TATCGCGGAA
GATACCTTAG AAAACTTCAA GAAAGAAACG GGCATTCGGG TAATTTACGA TGTGTTCGAT
AGTAACGAAG TGCTTGAGGC TAAATTACTG TCTGGTCGTA GTGGCTACGA TATCGTTGTC
CCCTCTAACC ACTTTCTCGC TAAGCAAATC AAAGCGGGTG CTTTCAAACC TTTAGATCGC
GCTAAGCTAC CTAACTTCAA AAATTTAAAT CCAGCCCTGA TGAAGCTACT TGAGAAAGCC
GATCCGGGTA ACCAGTATGC CGTGCCTTAT TTATGGGGAA CCAATGGTAT TGGTTACAAC
ATAGATAAAG TGAAAGCGGC TGTGGGTGAA GATGCACCAT TCAACTCAAT GGAACTGATC
TTCAATCCTA AATATGCTGA AAAAATCTCT AAGTGTGGCT TTGCTATGCT GGACTCTGCC
GATGATATGG TGCCCCAAGC ACTGATTTAT TTAGGTTTAG ATCCAAATAG TTCCAACCCG
AGCGATTATG AAAAAGCCGG TGAGTTACTA GAAATAATCC GTCCTTACGT GACCTATTTC
CACTCATCTC GCTATATTTC CGACTTAGCA AACGGTGACA TTTGTGTGGC CTTTGGTTTC
TCTGGCGACG TATTCCAAGC TAAAGCACGT GCTGAAGAGG CGGGTAATGG TAATAAGATT
GGTTACTCGA TTCCAAAAGA AGGCGCCAAC CTGTGGTTTG ATATGTTAGC TATCCCAGCG
GATTCGACTA ACGCAGATAA TGCACTGACG CTGATTAACT ATTTCCTCCG TCCAGAAGTC
ATAGCGCCTA TCTCTAACTA TGTAGCCTAT GCTAACCCGA ACGATCCTGC ACAACCTCTG
GTTGATGAGG CTATCCGCAC CGATCCCGCG ATTTATCCAC CACAAGAAGT GTTAGATAAA
CTTTATATTG GTGAAATCCG TCCTTTGAAA ATCCAACGCG TATTAACCCG TGTTTGGACC
AAAGTGAAGT CAGGACAATA G
 
Protein sequence
MKLFNKMTTL ALVTASVLAS AAAQAEEVVR VYNWSDYIAE DTLENFKKET GIRVIYDVFD 
SNEVLEAKLL SGRSGYDIVV PSNHFLAKQI KAGAFKPLDR AKLPNFKNLN PALMKLLEKA
DPGNQYAVPY LWGTNGIGYN IDKVKAAVGE DAPFNSMELI FNPKYAEKIS KCGFAMLDSA
DDMVPQALIY LGLDPNSSNP SDYEKAGELL EIIRPYVTYF HSSRYISDLA NGDICVAFGF
SGDVFQAKAR AEEAGNGNKI GYSIPKEGAN LWFDMLAIPA DSTNADNALT LINYFLRPEV
IAPISNYVAY ANPNDPAQPL VDEAIRTDPA IYPPQEVLDK LYIGEIRPLK IQRVLTRVWT
KVKSGQ