Gene Shew185_1085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew185_1085 
Symbol 
ID5370864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella baltica OS185 
KingdomBacteria 
Replicon accessionNC_009665 
Strand
Start bp1283224 
End bp1283985 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content43% 
IMG OID640829281 
Productputative lipoprotein 
Protein accessionYP_001365300 
Protein GI152999619 
COG category[R] General function prediction only 
COG ID[COG4105] DNA uptake lipoprotein 
TIGRFAM ID[TIGR03302] outer membrane assembly lipoprotein YfiO 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.46586e-08 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATAAAT TTTCCAAAGG CGTTACCTTA GTCCTATTTT CACTAGCGTT ATCAGCCTGT 
AGCAGCAGCC CTGATGATAA CGATATTGCC GCCAAAACGT CACCTGATGT GCTTTACACT
CAGGCAAGAA CCTCTATGGA ACTTGGCAAT TACTCTAAAG CTGTCCGTTC TTTGGAGGCG
TTAGACTCAC GCTTCCCCTT CGGACCTCAC AAAACTCAAG TCCAGTTAGA CCTGATTTAT
GCTTACTACA AAATGGACGA TGTCGCTTCG GGGATTGCGA ACATAGACAG ATTTATCCGT
CTTAATCCTA CCCACCCTGA TATTGACTAT GTGTTCTATA TGCGCGGTTT AGTGAACATG
CAAGCCGACA ACTATTTGTT CCACGATATG CTTAATATCG ACCGAACCGA TCGTGACCCT
AAAAATGCTC AAGATGCTTT CAAAGATTTT GATCGTCTTA TCAAAACTTA CCCTAACAGC
AAATATGCCG CCGATGCGCA AAAACGCATG TTAGCGTTGA AGAATCGCTT AGCAAGATAT
TCAATCCAAG TTGCCGAATA TTATCTCAAG ATGAATGCAT GGAGCGCCGC AGCAATCCGA
GCACAATCTG TAATGGAAAC ATATCCTGGC ACCCCTTCAA ATGAACGGGC ATTAGAGATA
ATGATAGAAG CTTATGGCGA ATTAGGTCAG AGCAAGCTGA AGCAAAACGT GCTCATGGTA
ATGCAAGCTA ACTATCCAAA CAATGAAATC TTATCAAACT AG
 
Protein sequence
MYKFSKGVTL VLFSLALSAC SSSPDDNDIA AKTSPDVLYT QARTSMELGN YSKAVRSLEA 
LDSRFPFGPH KTQVQLDLIY AYYKMDDVAS GIANIDRFIR LNPTHPDIDY VFYMRGLVNM
QADNYLFHDM LNIDRTDRDP KNAQDAFKDF DRLIKTYPNS KYAADAQKRM LALKNRLARY
SIQVAEYYLK MNAWSAAAIR AQSVMETYPG TPSNERALEI MIEAYGELGQ SKLKQNVLMV
MQANYPNNEI LSN