| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0873 |
|---|
| Symbol | |
|---|
| ID | 5369340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 1033066 |
|---|
| End bp | 1035000 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640829068 |
|---|
| Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
|---|
| Protein accession | YP_001365090 |
|---|
| Protein GI | 152999409 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGT CGTTAGAAAA ATCCCTTCTT GTTTGGCTTA AAGCCCAGAA AAAAGCTTGT
GGCTTGTTCC TTAAATTGTC GTTATGGCTT GGGATGATAA GTGCCGTCGC TATGGTGGCG
CAGGCTTATA TTATCGCGAC GATTCTGGAT GGCGTGATCA TGGGGCAGCA AGTCATACCG
CTAACTGCCA ATGCCCAAAT GGTCATTTCC AGCATGAGTA TTGATACTTA TATTCCTAAT
TTTATTGCGT TAATCGCCTT GATGTTACTG CGCGCCTTGC TGGCTTATGG ACGTGAACGC
GCCAGTTTTG AGGCGGGTAA GCGTCTACGT GGTCATATTC GCGCGGCAGT GATGGATAAG
TTGACTAAGC TAGGTCCGGC GTTTATTAAA GGTAAACCCG CAGGCAGTTG GGCCAGCATA
GTGTTAGAGC AAGTCGAAGA TTTACAAGAC TTTTATGCCC GATACCTCCC ACAAATCAGC
CTTGCTGGTT TTATTCCCGT ACTCATCTTA GCGGCGGTTT TCCCGATTAA CTGGGCGGCA
GGATTAATTC TGTTACTCAC AGCGCCGTTA ATCCCTATGT TTATGATCTT AGTTGGCATG
GGCGCTGCCG ATGCCAATCG CAAAAATTTC AGTGCGCTTG CAAGATTGAG CGGCCACTTT
ATGGATAGAT TAAAAGGCTT AAGCACGTTG AAACTCTTCC ACCGTGGTGA TGCTGAGCTA
AAGATAATCG CCACTGCTTC GGAAGAGTTC CGTAGTCGCA CTATGTCGGT ACTGCGGATG
GCTTTTTTAA GCTCGGCGGT ATTAGAGTTT TTTGCGGCGG TTTCGATTGC TGTGCTGGCG
GTTTATTTTG GTTTCAGTTA CTTAGGTCAC TTAGATTTTG GCTACTATGG CGCCCATGCC
AATATCAGCT CGAGTACAGA TCCTCAAATA GTCGGTATTC CATTTAGCCT GTTTACTGGG
CTGTTTATTC TGATTTTAGC CCCTGAGTTT TATCAACCCC TGCGGGATAT GGGCACTCAT
TACCACGCTA AGGCGCAGGC CGTCGGCGCC GCGGAAGCCT TGATTACCTT GCTCGAACAT
CCCGAACCTG AGTTTGTCGG CCAAGTGCGT ATCAATAGCA TCGAAACCCT GAGTGCTGAT
AATCTTGAAG TGTTCAGTTT TGATGGCACG CGTTTACTCG GCCCGCTGAG TTTTGAATTA
AAAGACAATC AACGTTTAGC CTTAGTTGGC CCAAGCGGTG CGGGGAAAAC CAGTTTACTC
AATGCCTTAT TGGGATTTTT ACCCTATAAG GGCCATTTGC TGATCAATGG CCATGAGTTA
TCCGCATTAG ATTTAGCCCA TTGGCGACAG CATTTAGCTT GGCTGGGCCA AGAGCCGCAG
TTATTCCACG GTACAGTGCG GGATAACGTA GCTTTAGCCG ACCCCACTCT GCCCGACGAT
ACGCTGTGGC ACTTGCTCGC AGAGGCCAAT ATTAGCGACT TCGTTAAGGC GCAGCCACTG
GGATTAGACT CGCCAGTCGG TGAGCAATCT TCCGGTTTAT CCGTCGGCCA AGCCCAGCGT
ATTGCCTTGG CAAGGGCGCT TGGGCAAAAG GCGAGTTTGT TTGTCCTCGA TGAGCCCACT
GCCAGTTTAG ATAGCCAGAG TGAGCAGGCG GTGAGTTCTG CGTTAAATCG GGCCATGGCG
GGTAAAATGT GCATTATGGT GACCCATAGA TTAGATCAGT TAGATCAAAT GGATACTATT
CTTGTGCTCG ATAAAGGCTT GATAGTACAG CGGGGCGACT TTACCACTTT GTCTAACACG
CACGGCTTAT TCCAAACCTT GCTGCGTGAG AATATTGAGT CCGTGGCGGA TATTGAACTT
GTACCGTTAT CGGTCAGCGC CAGCGCCACT CCGGTCGATA TTGCCGCCGA GCCCACTAAA
GGAGAGGCCC AATGA
|
|---|
| Protein sequence | MDKSLEKSLL VWLKAQKKAC GLFLKLSLWL GMISAVAMVA QAYIIATILD GVIMGQQVIP
LTANAQMVIS SMSIDTYIPN FIALIALMLL RALLAYGRER ASFEAGKRLR GHIRAAVMDK
LTKLGPAFIK GKPAGSWASI VLEQVEDLQD FYARYLPQIS LAGFIPVLIL AAVFPINWAA
GLILLLTAPL IPMFMILVGM GAADANRKNF SALARLSGHF MDRLKGLSTL KLFHRGDAEL
KIIATASEEF RSRTMSVLRM AFLSSAVLEF FAAVSIAVLA VYFGFSYLGH LDFGYYGAHA
NISSSTDPQI VGIPFSLFTG LFILILAPEF YQPLRDMGTH YHAKAQAVGA AEALITLLEH
PEPEFVGQVR INSIETLSAD NLEVFSFDGT RLLGPLSFEL KDNQRLALVG PSGAGKTSLL
NALLGFLPYK GHLLINGHEL SALDLAHWRQ HLAWLGQEPQ LFHGTVRDNV ALADPTLPDD
TLWHLLAEAN ISDFVKAQPL GLDSPVGEQS SGLSVGQAQR IALARALGQK ASLFVLDEPT
ASLDSQSEQA VSSALNRAMA GKMCIMVTHR LDQLDQMDTI LVLDKGLIVQ RGDFTTLSNT
HGLFQTLLRE NIESVADIEL VPLSVSASAT PVDIAAEPTK GEAQ
|
|---|
| |