Gene Shew185_0801 details

Gene Information

• Locus tag: Shew185_0801
• ID: 5372125
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella baltica OS185
• Kingdom: Bacteria
• Replicon accession: NC_009665
• Strand: +
• Start bp: 937088
• End bp: 939091
• Gene Length: 2004 bp
• Protein Length: 667 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 640828996
• Product: ABC transporter related
• Protein accession: YP_001365021
• Protein GI: 152999340
• COG category: [V] Defense mechanisms
• COG ID: [COG0577] ABC-type antimicrobial peptide transport system, permease component; [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00129194
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACAACGG CATTACTTGA AATTTCAGGT TGTTATCGCA CTTTTCAGGC GGGTGAGCAG 
CAACTTACTG TGCTGAAAGA TGTGAACCTG TCGATTGGCC GTGGCGAGAT GGTGGCGATA 
GTGGGCGCCT CTGGCTCGGG TAAATCGACC CTAATGAACA TTCTTGGTTG TTTAGATAAG 
CCGTCAGAGG GCGCGTATTT TATCAATGGC CAAGATACCT CAACGATGGA CGTGGATGAG 
TTAGCGCAGC TGCGCCGCGA GCACTTTGGC TTTATCTTTC AGCGTTATCA TTTACTGGGC 
GATTTAACCG CCATAGGCAA CGTCGAAGTG CCTGCTGTGT ATGCGGGTAA AGAGCGCACG 
GTGCGTAAAG ACAGAGCCGA GCATTTGTTG ACGCGTTTAG GCCTTGGCGA CAGGCTCGAC 
CATAAACCCA ATCAGCTCAG TGGTGGTCAA CAGCAGCGGG TCAGTGTGGC GCGCGCCTTG 
ATGAATGGCG GCGATGTGAT CCTTGCCGAT GAGCCGACTG GTGCGCTGGA TAGTCACAGT 
GGTGAAGAAA TGATGCAGCT GTTGCAGGAG CTGCACCGCG ACGGTCATAC CATCATTATC 
GTGACCCACG ATATGCACGT GGCCCAATAT GCCGACCGCA TTATCGAAAT CAAAGACGGC 
GTGATCATCA GCGATGAGCG CAGTCAGGAT AAACAGACTG CTAAGCCGCA AAGCTCAACG 
TTACAAAATA CGGCGTCACA AAAGCCTAAC GGCGCAGTAC TAGCAAAAGA CAGCTCGCGT 
GCGCGGGTGG CTTCGTGGGA CAGATATGTC GAGGCGCTTA AAATGGCGCT GGTGGCGATG 
TCGACCCACA GGTTACGTAC TTTCTTGACT ATGCTCGGGA TTATTATCGG TATCGCCTCA 
GTGGTTTCTG TGGTGGCCTT AGGTGAAGGC TCGCAGCAGG CCATTCTCAA AAGTATCAGT 
TCGATGGGAA CCAACACGAT TGATATTCGC CCGGGTTCAG GTTTTGGCGA TCGACGCTCG 
GCGCGGGTGC GTACCTTAAC GGCGACCGAT GCCAATGCCC TTAAAAATCT GCCCTATGTC 
GATAGCGTGA CCCCTAGTAT TGGCTCTAGC GCTACGGTAC GTTTTGGTAA TAAAGCGGTA 
TCGGCCTCGG TGAATGGGGT GGGGCCGGAG TTCTTTCGCG TGAGAGGTTA CGAGTTAGCA 
CAGGGGCAGT TTTGGGATGA TGCCAGCGTT GCAACACTCG CCCAAGATGC GGTGATTGAT 
GACAACACCC GTAAGGAGCT CTTTCCTAAC AGTGCAGGCG CGAATAACTC GGCCATCGGC 
CAAGTGATTT TCCTCGGGGA TTTACCCGTG CGCATCATAG GTGTGACGAA GCCAAAAGAA 
AGTGCCTTTG GTAACAGCGA TGCGCTCAAT GTGTGGGTGC CTTACACCAC AGTTTCTGGC 
CGTATGATAG GTAAAAACTA TTTGGATGGC ATCACAGTGC GACTCGATGA AACTGTGCCG 
AGTAACGCGG CGGAGCAGGG CATTATCGCG CTGCTTAAAA TGCGCCACGG CACTCAAGAT 
TTCTTCACTA TCAATACCGA TACCATTAGG CAGAACATCG AAAAAACCAC AGCAACCATG 
ACCTTATTGA TCTCGGCGAT CGCGGTGATT TCCCTTGTCG TTGGCGGAAT TGGGGTGATG 
AATATTATGT TAGTGTCTGT GACTGAACGG ACCCGTGAAA TCGGGGTACG TATGGCAGTG 
GGCGCGCGTC AGAGTGATAT TTTGCGCCAG TTCCTTATCG AAGCCATCTT AGTGTGTTTG 
TGTGGCGGAA CCTTAGGCAT TGCTTTGTCC TACTTAATTG GCGTGGTGTT TGCTCAAACG 
GGAGGCAGTT TCCAAATGAT TTACTCCACC ACATCCATCG TTGCCGCCTT TGCCTGTTCG 
ACCTTAATTG GTGTGCTATT TGGTTTCTTA CCCGCCCGCA ATGCGGCGCA GTTAGATCCC 
GTTGACGCAT TAGCCAGAGA GTAA 

 

Protein sequence

MTTALLEISG CYRTFQAGEQ QLTVLKDVNL SIGRGEMVAI VGASGSGKST LMNILGCLDK 
PSEGAYFING QDTSTMDVDE LAQLRREHFG FIFQRYHLLG DLTAIGNVEV PAVYAGKERT 
VRKDRAEHLL TRLGLGDRLD HKPNQLSGGQ QQRVSVARAL MNGGDVILAD EPTGALDSHS 
GEEMMQLLQE LHRDGHTIII VTHDMHVAQY ADRIIEIKDG VIISDERSQD KQTAKPQSST 
LQNTASQKPN GAVLAKDSSR ARVASWDRYV EALKMALVAM STHRLRTFLT MLGIIIGIAS 
VVSVVALGEG SQQAILKSIS SMGTNTIDIR PGSGFGDRRS ARVRTLTATD ANALKNLPYV 
DSVTPSIGSS ATVRFGNKAV SASVNGVGPE FFRVRGYELA QGQFWDDASV ATLAQDAVID 
DNTRKELFPN SAGANNSAIG QVIFLGDLPV RIIGVTKPKE SAFGNSDALN VWVPYTTVSG 
RMIGKNYLDG ITVRLDETVP SNAAEQGIIA LLKMRHGTQD FFTINTDTIR QNIEKTTATM 
TLLISAIAVI SLVVGGIGVM NIMLVSVTER TREIGVRMAV GARQSDILRQ FLIEAILVCL 
CGGTLGIALS YLIGVVFAQT GGSFQMIYST TSIVAAFACS TLIGVLFGFL PARNAAQLDP 
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