| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_0800 |
|---|
| Symbol | |
|---|
| ID | 5373636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | + |
|---|
| Start bp | 935835 |
|---|
| End bp | 937085 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640828995 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001365020 |
|---|
| Protein GI | 152999339 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000642362 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACGA CAATACCGAT GAAAAAATCC TCAAAGCGTA AATTGCTGCT CGCGTTAAGC
GGCTTAATCC TCTTGAGTGG CGGTGCTTAT TTTATGTGGC ATAAGCCTGA AACGGCACCT
GCCTATGTGA CAGAAGCGGT GCGCCGTGGC GATATCGAAA ACTCAGTGCT GGCCAATGGC
ATGTTGCAGG CCTCTAAACT GGTGAGTGTG GGTGCGCAGG TATCGGGGCA AATCTTAAGT
TTGCCGCTGG CACTGGGGGA TGAAGTAAAG AAAGGCGATT TGATTGCTCA AATTGACAGC
CTAGCGCAGC AGAATAATTT GAAGGATGCA CTCGCATCAC TCAAGAGTAT CAATGCCCAG
TTCCGCGCCA AACAGGCGCA GATCCGCCAA GCCAAGTTGG AGTTTAGCCG CCAGCAGCAA
ATGCTTGCCG ATAAGGCCAG TTCCCGCGCC GATTATGAAG TGGCCGATGC TAATCTAACG
GTTTATCAAG CCGAACTTGA GCAATTAGAA GCGCAAAAAC AACAGGCTGA GATTAACGTC
GACAGTGCCC GAATCGATTT AGGTTATACC AAAATTACCG CACCTATGGA CGGCACTGTG
GTGTATTCGG CGGTGGAAGT GGGGCAAACC GTTAACGCCA ATCAAACGAC GCCGACGATA
GTGGAAATGG CGCAGCTCGA TACCATGACA GTTAAAGCAC AGATTTCTGA AGCGGATGTC
GTCAATGTCC ATCCGGGTCA AGCTGTGTAT TTCACGGTAC TTGGCAAACC AAATCATCCC
TACCGTGGCA TCTTAAGGGC GATTGAACCT GGACCGATTT CGATGGATGG CGACGATAGT
AATATGAGCT CTAGCGACTC AGACGCCATT TATTACCATG GGTTATTCGA TGTTGAAAAC
CCAGACCGCA CCTTGCGTAT CGGCATGACG GCGCAGGTAT CCATAGTGTT AGCTAAGGCC
GATGATGCGC TATTAGTACC TGCGCAGATA TTGCGTATAA AGCCGAGGGA GAAATCCGCG
GCGCCAGAGG CTAAGTCTGG CGAGCGTAAA GCCCGCAGTG GCCCGCAATA TCAAGTGCCT
GTGTTAGTTG ATAACCAAGT GCAATATGTG GATGTCACGG TTGGGATTAA CAACAAAATC
AATGCCGAAA TCATCGCGGG CTTGAAGGAG GGCGATCAGG TCGTGCTTGG CATGCCTTCC
GCCGATGATG GCAGCAGCAA ATTCCGTCGT CCACCTAGCG TGAGGTTTTA A
|
|---|
| Protein sequence | MDTTIPMKKS SKRKLLLALS GLILLSGGAY FMWHKPETAP AYVTEAVRRG DIENSVLANG
MLQASKLVSV GAQVSGQILS LPLALGDEVK KGDLIAQIDS LAQQNNLKDA LASLKSINAQ
FRAKQAQIRQ AKLEFSRQQQ MLADKASSRA DYEVADANLT VYQAELEQLE AQKQQAEINV
DSARIDLGYT KITAPMDGTV VYSAVEVGQT VNANQTTPTI VEMAQLDTMT VKAQISEADV
VNVHPGQAVY FTVLGKPNHP YRGILRAIEP GPISMDGDDS NMSSSDSDAI YYHGLFDVEN
PDRTLRIGMT AQVSIVLAKA DDALLVPAQI LRIKPREKSA APEAKSGERK ARSGPQYQVP
VLVDNQVQYV DVTVGINNKI NAEIIAGLKE GDQVVLGMPS ADDGSSKFRR PPSVRF
|
|---|
| |